Gene Rleg2_0796 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRleg2_0796 
Symbol 
ID6979514 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhizobium leguminosarum bv. trifolii WSM2304 
KingdomBacteria 
Replicon accessionNC_011369 
Strand
Start bp814046 
End bp816343 
Gene Length2298 bp 
Protein Length765 aa 
Translation table11 
GC content65% 
IMG OID643395507 
Productdiguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) 
Protein accessionYP_002280316 
Protein GI209548399 
COG category[T] Signal transduction mechanisms 
COG ID[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain 
TIGRFAM ID[TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value0.341606 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCCAAAC CGAGTGCCAG GCGATGGGAA TCGACCGATG CCCTGTCGGC CGAAACGCGG 
CGCATCGTCG CCGCGACGGA GGCGATGATG GCCTCGACCG CCCATCATCT CTCCGACGGC
ATCGAGAACC TGCGCCTGAA GACGATCGTC CACGAACTTC CGGATTTCCT CTACGTCAAG
GATCGTGACA GCCGCTTCGT CTTCGCCAAC ACCGTCACCG CCAGCAGCCT CGGCCTGGAG
AGCGCTGATC TGCTTACCGG CAAACGTGAT TTCGACCTGT TCGATTTCGA GACGGCTCTC
CACCATTTCG ATATCGAGCA GCAGATCATG GCGACGGGGC AAGCCTGCAT CGACATGGAG
GAAAGCTACG TCCTGCCCGG CGGCAAAAGG CCGATATGCC GGCTGACCTC GAAGATACCG
CTGCGCAACG ATCGCGGCGA GGTCATCGGC CTCATCGGCG TTTCCCGCGA TATCACCGAA
CGCAAGCGCC AGGAGGATCT CCATCGCGAG CAGGCGAACC TGCTCGAAAT GATCGCCCGC
AACGAGCCGC TGCCGATGAT CCTCGAGGCG CTGGTGCTGA TGATCGAAGC GCAGCTGACC
GGCATCGACG GGTCGGTGCT GCTGCTGAAC GGCGAGGGCA CCAGGCTCTA TCACGGCGCC
GCCCCCAATC TGCCCGGCGG CTACAGCCGG CTGATCGACG GCGTCACCAT CGGTCCCAAG
GTGGGCTCGT GCGGCACCGC CGCTTGGCGT GGCCAGACGG TGATCGTCGA AGACGTGATG
AGCGATCCGC TGTGGGAGGA TTTCCGCGCG CTGGTCGCGC CCTTCGGCTT CCGCTCCTGC
TGGTCGACGC CGATCGTCAC CTCGCAGAAC AATGTGCTCG GCACCTTCGC CCTCTACTCC
AGGGAAGTCC GCCGGCCCAC GGAGCACGAA ATAAAGCTGG TGGCGCTCGC CACGCACATC
GCCGGCATCG CCATCGAGCG CAAGCGTGTC GACGACCGCA TCCATTTCAT GGCCCATCAC
GACGATCTCA CCGGTCTGCC GAACCGGGCC TTCCTGAAGG AGCGGCTCGC CAATATCCTC
GACCAGGCCC GGCGCCACAC CCGCAAGGTG ACTGTCGCCT ATATCGATCT CGATAATTTC
AAGGACATCA ACGACGGCCG CGGCCACGCC GCCGGTGACG AGGTGCTGAA GGAAACCGCG
GCCCGCATGG CCAACAGCAT CCGGGCCTCG GATATGGTGG TGCGTCTCGG CGGCGACGAA
TTCCTCGTCG TGCTCGTTCA TCAGTCGAGC CACGATGCCG GCATCACGCG CCGCCTCCGC
GAGTTGCAGA AGGCAATCAA CCGGCCGATC CCCAGCGAAG GCGGCGAGAT CACCGTCACC
TCGAGCATCG GCGTTGCCGC CTTTCCCTTC GACGGCGCGA CCTCGGAAGA GCTTCTCGCC
AATGCCGACC GCGCCATGTA CCGGGCCAAG GAGCTCGGCC GCAACACCCT GCAGCATCAC
GATGGCGGCG GCACGCCTGT GGGAATGCCG CTCGGCGAGC AGGAGGAGCT GCACCAGGCG
ATTACCGGCG ACCAGCTGTT CCTGCAATAT CAGCCGCAGG TCGATGTCGC CACCGGCCGC
ATCACCGGCA TCGAGGCGCT GGTGCGCTGG AACCATCCGG CCAAGGGCAG GGTGCCGCCG
GTCAATTTCA TTCCGCTCGC CGAAGAGACC GGCCTCATCG TTCCCCTCGG CCTCTGGGTG
CTGAACGAGG CGTGCCGCCA GGCGCGCCAA TGGCAGGATA TGGGCCTGAC GCCGCTGACC
ATCGCCGTCA ACGTCTCGGC CAAGCAGTTC GCCGATCCGG ATTTTGCAAG CCACGTCGCC
GAAGCGCTGG AGCGCCACCG CCTGCAAGCG CGCTGGCTGG AGCTCGAGGT TACCGAAAGC
GTGGTGATGC AGGATGCCGA ACGCGCGCTC GCCATGATGG AATCGCTGCG GGCGCTCGGT
GTTCGCCTGT CGATCGACGA TTTCGGCTCC GGCTATTCCA GCCTGGCGGC GCTGAAGACC
TTCCCCTTCG ACCGCCTGAA GATGGACCGT TCGCTGGTCG AGGCCCTGCC GGGCGACAAG
ACCGCCGTCG CCATCGCCTC GGCGGTCATT TCGCTGGCAC AGACGCTGAA GCTTTCGGTC
CTCGCCGAAG GTGTCGAAAC CGACGCCCAG ATGGATTTCC TGCGTCACGC GCATTGCGAA
GAAGCGCAGG GCTATCGCTT TTCGAAGCCC GTCTCTCCGG AGGAAATCCC CGGATTGCTG
CGGGCGCGCA GCCTCTAA
 
Protein sequence
MPKPSARRWE STDALSAETR RIVAATEAMM ASTAHHLSDG IENLRLKTIV HELPDFLYVK 
DRDSRFVFAN TVTASSLGLE SADLLTGKRD FDLFDFETAL HHFDIEQQIM ATGQACIDME
ESYVLPGGKR PICRLTSKIP LRNDRGEVIG LIGVSRDITE RKRQEDLHRE QANLLEMIAR
NEPLPMILEA LVLMIEAQLT GIDGSVLLLN GEGTRLYHGA APNLPGGYSR LIDGVTIGPK
VGSCGTAAWR GQTVIVEDVM SDPLWEDFRA LVAPFGFRSC WSTPIVTSQN NVLGTFALYS
REVRRPTEHE IKLVALATHI AGIAIERKRV DDRIHFMAHH DDLTGLPNRA FLKERLANIL
DQARRHTRKV TVAYIDLDNF KDINDGRGHA AGDEVLKETA ARMANSIRAS DMVVRLGGDE
FLVVLVHQSS HDAGITRRLR ELQKAINRPI PSEGGEITVT SSIGVAAFPF DGATSEELLA
NADRAMYRAK ELGRNTLQHH DGGGTPVGMP LGEQEELHQA ITGDQLFLQY QPQVDVATGR
ITGIEALVRW NHPAKGRVPP VNFIPLAEET GLIVPLGLWV LNEACRQARQ WQDMGLTPLT
IAVNVSAKQF ADPDFASHVA EALERHRLQA RWLELEVTES VVMQDAERAL AMMESLRALG
VRLSIDDFGS GYSSLAALKT FPFDRLKMDR SLVEALPGDK TAVAIASAVI SLAQTLKLSV
LAEGVETDAQ MDFLRHAHCE EAQGYRFSKP VSPEEIPGLL RARSL