Gene Rleg2_0048 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRleg2_0048 
Symbol 
ID6978757 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhizobium leguminosarum bv. trifolii WSM2304 
KingdomBacteria 
Replicon accessionNC_011369 
Strand
Start bp48393 
End bp49955 
Gene Length1563 bp 
Protein Length520 aa 
Translation table11 
GC content63% 
IMG OID643394759 
ProductRNA polymerase factor sigma-54 
Protein accessionYP_002279577 
Protein GI209547660 
COG category[K] Transcription 
COG ID[COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog 
TIGRFAM ID[TIGR02395] RNA polymerase sigma-54 factor 


Plasmid Coverage information

Num covering plasmid clones28 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value0.0373513 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCACTGT CCGCCAGTCT TTTCCTGCGC CAGAACCAAT CGCTGGTGAT GACACCGCAG 
CTGATGCAAT CCATCCAGCT GCTGCAGATG ACCCATGTCG AACTCACTCA GTTCATCGCC
CAGGAAGTGG AGAAGAACCC GCTGCTCGAA TTTCCGTCGA ATGACGGCGA GGCGGGCGCA
GAACGCGGCG AATCCGAGGA CGAGCCCTAT GGTCATTCCC CGGAGGATGC GGGCTCGGAC
GACGGCTACG ACAACCGCAC CGACGCGCTC TCCAGCGACT GGTACGACAA TGGCGGCAGC
GCCAGCACCA GCCGGCTGAA CGACGAGCTC GACGCCAACT ACACCAACGT CTATCCTGAC
GACAGCGCGC CGCAGCGCCT CGATGCGCCC GAACTCGTCG GCCAGTGGAA ATCGATGCCG
GGCAGCGGCG GCGAGGGCGC CGATTACGAT CTCGACGATT TCGTCGCCGG CCAGGTGTCG
CTGCGCGATC ATCTCGCCCA GCAGATCCCC TTCGTCCTGC CCGACATGGC CGATCGGCTG
ATTGCCCAGA ATTTCGTCGA TCAGCTCGAC GATGCCGGTT ATCTGCAAGT CGATCTCGTC
GAGACCGGCG AGCGGCTGGG CACGAGCCTG ACTGCGGCCG AGCGTGTGCT TGCCGCCCTC
CAGACGCTCG ATCCGCCCGG GGTTTTCGCC CGCAGCCTCT CGGAATGCCT GGCGATCCAG
CTCAGGCAGA AGGACCGGTA CGACCCCGCC ATGCAGGCGC TGGTCGAAAA TCTCGAACTG
CTGGCGCGGC GCGATTTTGC CACGCTGAAG CGGCTCTGCG GCGTCGACGA GGAAGACCTT
CTCGATATGC TCGGCGAAAT CCGGCAGCTC AATCCCAAGC CCGGCAGCGG TTTCGAGACC
GGCGTTTCCG AGGCGATCAT GCCCGATGTG GTCGTCCGGC CTTCCCTCGA TGGCGGCTGG
CTGGTCGAGC TCAATCCGGA TACGCTGCCG CGCGTGCTCG TCAATCAGTC CTATTTTTCC
CGGGTGACGA GGAATGGCGA CGATCACGCC TTCCTTTCCG AATGCTTGCA GAGCGCCAAC
TGGCTGACGC GCAGCCTCGA CCAGCGGGCA AAAACCATCC TGAAGGTGGC AAGCGAGATC
GTCCGCCAGC AGGATGCCTT CCTGCTGAAT GGCGTCGACC ACCTGCGCCC GCTGAACCTG
AAGACGGTCG CCGAGGCGAT CAAGATGCAC GAATCCACCG TCAGCCGCGT CACCTCGAAC
AAATACATGC TGACGCCGCG CGGCCTCTTC GAGCTCAAAT ATTTCTTCAC CGTCTCGATC
AGCGCGGTTG CCGGCGGCGA CAGCCATTCG GCCGAGGCGG TGCGTCACAA GATCCGCGCG
CTGATCATGC AGGAGAGCCC TGACGCGGTG CTTTCCGACG ACGATATCGT CGACATGCTG
AAGAAGGGCG GTGTGGATCT CGCCCGCCGC ACGGTTGCCA AATACCGCGA GGCTATGAAC
ATCGCCTCCT CAGTCCAGCG GCGGCGCGAA AAACGCGCGC TCGCCAAGGT CGCCGGTTTC
TGA
 
Protein sequence
MALSASLFLR QNQSLVMTPQ LMQSIQLLQM THVELTQFIA QEVEKNPLLE FPSNDGEAGA 
ERGESEDEPY GHSPEDAGSD DGYDNRTDAL SSDWYDNGGS ASTSRLNDEL DANYTNVYPD
DSAPQRLDAP ELVGQWKSMP GSGGEGADYD LDDFVAGQVS LRDHLAQQIP FVLPDMADRL
IAQNFVDQLD DAGYLQVDLV ETGERLGTSL TAAERVLAAL QTLDPPGVFA RSLSECLAIQ
LRQKDRYDPA MQALVENLEL LARRDFATLK RLCGVDEEDL LDMLGEIRQL NPKPGSGFET
GVSEAIMPDV VVRPSLDGGW LVELNPDTLP RVLVNQSYFS RVTRNGDDHA FLSECLQSAN
WLTRSLDQRA KTILKVASEI VRQQDAFLLN GVDHLRPLNL KTVAEAIKMH ESTVSRVTSN
KYMLTPRGLF ELKYFFTVSI SAVAGGDSHS AEAVRHKIRA LIMQESPDAV LSDDDIVDML
KKGGVDLARR TVAKYREAMN IASSVQRRRE KRALAKVAGF