Gene Gdia_3542 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagGdia_3542 
Symbol 
ID6976995 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGluconacetobacter diazotrophicus PAl 5 
KingdomBacteria 
Replicon accessionNC_011365 
Strand
Start bp3875095 
End bp3876528 
Gene Length1434 bp 
Protein Length477 aa 
Translation table11 
GC content69% 
IMG OID643393062 
Producttype I secretion outer membrane protein, TolC family 
Protein accessionYP_002277880 
Protein GI209545651 
COG category[M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG1538] Outer membrane protein 
TIGRFAM ID[TIGR01844] type I secretion outer membrane protein, TolC family 


Plasmid Coverage information

Num covering plasmid clones33 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones48 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGCGGA ACTGTGGGAT CGGGGCGGGG CTGGCGGCGC TGCTGTGCGG CACCACGGCC 
TGGGCCCAGC GCTATGACGG CAGCGGGTCC CCGTCCTTCG TTCCCCATAC GCTGCAGGAA
GCGCTGGCGG CGTCCTACCT GACCAATCCG ACGCTGCAGC AGGAGCGCGC GGCCCTGCGC
GCGACGGACG AGCAGGTGCC GACCGCGCTC GCCGGCTGGC GCCCGACCGT CAGCACCAAC
GTGAACATGA CCTATTACTC CGGCCTCAAC GCGGTGGCGC GGCAGGAAGG GTACGCCGGG
TATTCAAGGC GGTTCGACGT GCCGGGCTAT ACCGGCGGCG TGTCGCTTTC CCAGCCGATC
TATACCGGCG GCAAGACCAC CGCCAGCACC CACAAGGCGG TCAATGCCGT GATGGCGGAA
CGCGCCCGGC TGATCGCGAC CGAACAGCAG GTCTTCAGCA GCGTCGTCAG CGCCTATGTC
GGCGTGATCG AAGACGAACA GTTGCTGCAG TTGAACATCA ATAACGAGAA GGTGCTGCAG
GAACAGCTCC GCGCCACGTC CGAGCGCTTC CGCGTGGGCG AGATCACCCG CACCGACGTG
GCCCAGGCCG AGGCCGCGCT GGCCAGCGCC CGCGCCGCCC GGCAGGAGGC CGAGGGCACG
CTGCAGACGG CGCAGGCGAC CTACACCCAG GTGGTCGGCA TGTCGCCGCC CCCCAACCTG
GTGCCGCCGC AGCCGCTGGT GCTGCCGGTG AAGTCGCAGA ACGAGGCGAT CGCCCAGGCG
GTGCAGAACA ATCCGAACGT GATCGCCGCC CTGTTCTCCG AGGCGTCGAA CAAGGACGGG
GTCGCCGTCG CCATGGCGGC GATCCTGCCC AAGGTGACGG CCGATGCCAG CTACGTCCAC
AGCATCAACC AGAGCAGCGG CCGGTCGCTG GAGGACGAGA AATACGCGAC GCTGAACGTC
CAGTTCCCGC TCTACCAGGG CGGATCGGAA TATGCCGCCG TCCGCCAGGC GCGCCAGCAG
GTGGCCCAGG CGCATCGCGC GGTCGACATC CAGCGCCGCG CCGCGTTGCA GCTCGCCTCG
TCCAACTGGC AGCAACTGAT GGCCTATGCG GCCTCGATCC AGAGCGACCG CACCGCCATC
GCGTCGAACA TCGTCGCCCT GGACGGGGTG GAGCGCCAGG CGATCGTGGG CACCAGCACG
ACGCTGGAAG TCCTGCAGCA GCAGCAGACC CTGCTTCAGG CCCAGGTCGC GCTGGTGCAG
AGCCTGAGCA ATCTCGTCAC CGCGTCATAC GGCGTGGCGG CCGCTATCGG GCGGCTGACG
GCGGCGGACC TGAAGCTGGA CGTCCCGCGC TATGACGAGA CCGCCTATTA CAAGGCGGTC
AAGGACCGCC CGTGGGGCAT CGGCGACCAG GCCACCGACC AGCCAGGCCG CTGA
 
Protein sequence
MKRNCGIGAG LAALLCGTTA WAQRYDGSGS PSFVPHTLQE ALAASYLTNP TLQQERAALR 
ATDEQVPTAL AGWRPTVSTN VNMTYYSGLN AVARQEGYAG YSRRFDVPGY TGGVSLSQPI
YTGGKTTAST HKAVNAVMAE RARLIATEQQ VFSSVVSAYV GVIEDEQLLQ LNINNEKVLQ
EQLRATSERF RVGEITRTDV AQAEAALASA RAARQEAEGT LQTAQATYTQ VVGMSPPPNL
VPPQPLVLPV KSQNEAIAQA VQNNPNVIAA LFSEASNKDG VAVAMAAILP KVTADASYVH
SINQSSGRSL EDEKYATLNV QFPLYQGGSE YAAVRQARQQ VAQAHRAVDI QRRAALQLAS
SNWQQLMAYA ASIQSDRTAI ASNIVALDGV ERQAIVGTST TLEVLQQQQT LLQAQVALVQ
SLSNLVTASY GVAAAIGRLT AADLKLDVPR YDETAYYKAV KDRPWGIGDQ ATDQPGR