Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Gdia_3490 |
Symbol | |
ID | 6976942 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Gluconacetobacter diazotrophicus PAl 5 |
Kingdom | Bacteria |
Replicon accession | NC_011365 |
Strand | + |
Start bp | 3820643 |
End bp | 3822079 |
Gene Length | 1437 bp |
Protein Length | 478 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 643393010 |
Product | type II secretion system protein E |
Protein accession | YP_002277829 |
Protein GI | 209545600 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG4962] Flp pilus assembly protein, ATPase CpaF |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 28 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 34 |
Fosmid unclonability p-value | 0.057514 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAGCTTCG GAAAGGGCTT CGGCCGGCTA GAGAACAAGC CTGTCGCCAC CAGGCCGGAT CCGGCGCCGA GCCAATCGGC GGGGGGCCTT CAGCCTGTTC AGGAGCCGAG CCAGCCACCC GCCGTCCCGG CGGTTCCGGA CCAGGCCCCC GTTGTCGATG TCGAGGAAAA CACGGCGACG AAAGCCCATT CGCTGGAATT GCGCGCGCTG TGCCTGGCCC GTCTGGATCC GGGCGTCGTG CTCGCCCTGG CGCCCGAGCG GCTGGCCGAG GAAGTCGAAC GCGTCGTTGG CCAGGCCGCA TCCGAGCGGC GCATCCAGCT CAACCTGCGC GAGCAGCGGG AAATCGCGAC CGAACTTGTC CATGACATGC TCGGTCTCGG GCCGATCCAG CCCCTGCTGG ACGACGAAAC GATTTCGGAC ATCCTGATCA ACGGGCCGAA CCGGATCTTC GTGGAAAGGC GGGGCAAGAC GGTCCTGTCG AATGTCCGGT TCCGCGATGT CGATCATCTG GTGTCCGTCA GCCAGCGGAT TGCCTCGGCT GTCGGGCGGC GCGTCGACGA ATCCAGCCCG ACCGTCGATG CGCGCCTGAA GGATGGATCG CGCGTCAATA TCGTCTTTCC GCCGCTGGCG CTGGACGGTC CCTATGTATC GATCCGGAAA TTTTCCAAAC GCCCGATCAA TTTTTCCCGT CTGGTCGAAA ATGGTAGCTG CACGCCCAAG CTGGCGAAGA TCCTGGAAAT CGCGGGACGG GTGCGCCTGA ATATCGTGAT TTCGGGCGGC ACGGGGTCGG GCAAGACCAC CCTGATGAAT GCGGTGTCGC ATTTCATCGA TTTCGACGAA CGCGTCATCA CGGTGGAAGA CGCGGCGGAA CTGCAGCTTC AGCAGCCGCA CGTCGTGCGT CTGGAAACCC GTCCCCCGTC GATCGAGGGC AAGGGGGAAG TCACCCAGCG CGATCTTGTG CGCAATGCGC TGCGTATGCG CCCCGACCGG ATCATCATCG GCGAGGTCCG AGGCGCCGAG GCGTTCGACA TGCTGCAGGC CATGAATACC GGCCATGACG GCAGCATGTC GACGATTCAC GCCAACACCA CCCGCGATGC CGTCACCCGT ATCGAGAACA TGGTCCAGAT GGGCAGCTTC GGACTGCCGA CCACGGCCAT CCGGACCCAG ATCGTGGGGG CGGTGGACAT GATCGTGCAG GTCGGCCGTC ATCGCGACGG CGGCCGCCGG ATCGTGCAGG TGACCGATGT CTCGGGGCTG GAGGGCGATG TCGTCGTCCT GAACGATATC TTCAATTTCG TCTTCGACGG GGAAGACATG GACGGACGCC TGCACGGGCG GTACGAGGAA TCGAAGATCC GCCCGAGCTT TTTCGACAAG CTGAAATATT ATGAGCTGGA TCGTGCCTGG TACGCGGCGT TCGAAGAGCT TGAGTGA
|
Protein sequence | MSFGKGFGRL ENKPVATRPD PAPSQSAGGL QPVQEPSQPP AVPAVPDQAP VVDVEENTAT KAHSLELRAL CLARLDPGVV LALAPERLAE EVERVVGQAA SERRIQLNLR EQREIATELV HDMLGLGPIQ PLLDDETISD ILINGPNRIF VERRGKTVLS NVRFRDVDHL VSVSQRIASA VGRRVDESSP TVDARLKDGS RVNIVFPPLA LDGPYVSIRK FSKRPINFSR LVENGSCTPK LAKILEIAGR VRLNIVISGG TGSGKTTLMN AVSHFIDFDE RVITVEDAAE LQLQQPHVVR LETRPPSIEG KGEVTQRDLV RNALRMRPDR IIIGEVRGAE AFDMLQAMNT GHDGSMSTIH ANTTRDAVTR IENMVQMGSF GLPTTAIRTQ IVGAVDMIVQ VGRHRDGGRR IVQVTDVSGL EGDVVVLNDI FNFVFDGEDM DGRLHGRYEE SKIRPSFFDK LKYYELDRAW YAAFEELE
|
| |