| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gdia_3036 |
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| Symbol | |
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| ID | 6976470 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gluconacetobacter diazotrophicus PAl 5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011365 |
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| Strand | + |
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| Start bp | 3323540 |
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| End bp | 3325492 |
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| Gene Length | 1953 bp |
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| Protein Length | 650 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 643392544 |
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| Product | RNA polymerase sigma factor RpoD |
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| Protein accession | YP_002277381 |
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| Protein GI | 209545152 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 0.672133 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 35 |
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| Fosmid unclonability p-value | 0.0730738 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGACAA AGACAGCCGC GGGTTCGGAA GCGACTGCTG GCGATCAGGA CAACGACACC
ACTCTGCTGG ATACCCAATC CGGAGCCGTC AAGAGACTGA TCGCACGGGG CAAGGAACGG
GGGTACATCA CCTTCGACGA GCTGAACGCC GTCCTGCCCC AGGATCAGAT GTCGTCGGAG
CAGATCGAGG ATGTGATGGC GGTCCTGTCC GAAATGGGCA TCCAGGTCGT CGAGAACGAG
GATAACGACG ACAGCGAGGC CAATCGCGAG GAGAAGGCCG AGGAGGCCGA CACCGAGGGC
GAGGAAGCCG GGGGTGCCGC GGGCAACGTC GATACCGAGA GCCTGGGCCG TACCGACGAC
CCGGTGCGCA TGTACCTGCG CGAGATGGGG TCCGTCGAAC TGCTGTCGCG CGAGGGCGAA
ATCGCCATCG CCAAGCGGAT CGAGGCCGGC CGCGACGAGA TGATCGGCGG CCTGTGCGAA
AGCCCGCTGA CCTTCCGCGC CATCATTTCG TGGCACGAGC GCCTGAAGGC GGGCGAGATG
CTGCTGCGCG ACATCGTGGA CCTGGAGGCC ATGCAGTCCG GCGGCGCCGA AGCCGAGGCC
GGCGCCGAGG GCGGCGAGCA GGAAGACGGC AGCTTCGACG CGGCCCCCGA GAGCGAGGAC
GGCGAGGAAG GCGACAGCGC CGGCCTGTCG CTGTCCGCGC TGGAAGAAAA GCTGAAGCCC
GAGATCCTGG CGCAGTTCGA GGAAATCGAG GAACTGTATT CCCGGCTGCA GAAGCTGCAG
TCGAAGCGGC TGGAGACCCT GACCTCGGGC GCCGAGATGT CGGACAAGTC CGAGAAATCG
TACGAGAAGC TGCGCGAGGA ACTGGTGGGC AAGGTGCAGC AGGTCCACCT GCACAACACC
CGCATCGAGG TGCTGGTGCA GCACCTGAAG GAAATCTTCC AGCGGCTGAA CGGGCTGGAA
GGGCGCATGC TGCGCCTGGC CGAGAGCACC AAGGTCTCGC GCGAGGACTT CCTGATCAAG
TATCGCGGCA GCGAGCTGGA CCCGGGCTGG ATGGACATGG TGTCCGCCCT GCCGGGCAAG
GCGTGGAAGA ATTTCGTCGC CAAGCATTCG GCGTCGGTGC TGGACCTGCG CGGCCAGGTC
GCATCCCTGT CGCAGGAAAC CGGCCTGCCG GTCGGCGAAT TCCGCCGCGT CTACGCCACC
GTGTCGCGCG GCGAGCGCGA TTCGGCCCGC GCGAAGAAGG AGATGATCGA GGCGAACCTG
CGCCTGGTGA TCTCGATCGC CAAGAAATAT ACCAATCGCG GGTTGCAGTT CCTGGACCTG
ATCCAGGAGG GCAATATCGG CCTGATGAAG GCGGTGGATA AGTTCGAATA TCGCCGGGGC
TACAAGTTCT CGACCTATGC CACGTGGTGG ATCCGCCAGG CGATCACCCG GTCGATCGCC
GACCAGGCCC GCACGATCCG CATCCCGGTC CATATGATCG AGACCATCAA CAAGCTGGTC
CGCACGTCGC GCCAGATGCT GCATGAGATC GGACGCGAGC CCGCGCCCGA GGAACTGGCC
GAAAAGCTGG GCATGCCGCT GGAGAAGGTG CGCAAGGTCC TGAAGATCGC CAAGGAACCG
ATCTCGCTGG AAACGCCGAT CGGTGACGAG GAAGACAGCC ACCTGGGCGA TTTCATCGAG
GACAAGACGG CGGTCATCCC GCTGGACGCC GCGATCCAGA CCAACCTGCG CGAAGCCACG
ACGCGGGTCC TGTCCTCGCT GACCCCGCGT GAGGAACGCG TGCTGCGCAT GCGCTTCGGC
ATCGGCATGA ACACCGACCA CACCCTGGAA GAGGTGGGCC AGCAGTTCAA CGTGACGCGC
GAGCGCATCC GCCAGATCGA GGCGAAGGCG TTGCGCAAGC TGAAGCACCC GAGCCGCAGC
CGCAAGCTGC GCTCGTTCCT GGACGACAAC TGA
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| Protein sequence | MATKTAAGSE ATAGDQDNDT TLLDTQSGAV KRLIARGKER GYITFDELNA VLPQDQMSSE
QIEDVMAVLS EMGIQVVENE DNDDSEANRE EKAEEADTEG EEAGGAAGNV DTESLGRTDD
PVRMYLREMG SVELLSREGE IAIAKRIEAG RDEMIGGLCE SPLTFRAIIS WHERLKAGEM
LLRDIVDLEA MQSGGAEAEA GAEGGEQEDG SFDAAPESED GEEGDSAGLS LSALEEKLKP
EILAQFEEIE ELYSRLQKLQ SKRLETLTSG AEMSDKSEKS YEKLREELVG KVQQVHLHNT
RIEVLVQHLK EIFQRLNGLE GRMLRLAEST KVSREDFLIK YRGSELDPGW MDMVSALPGK
AWKNFVAKHS ASVLDLRGQV ASLSQETGLP VGEFRRVYAT VSRGERDSAR AKKEMIEANL
RLVISIAKKY TNRGLQFLDL IQEGNIGLMK AVDKFEYRRG YKFSTYATWW IRQAITRSIA
DQARTIRIPV HMIETINKLV RTSRQMLHEI GREPAPEELA EKLGMPLEKV RKVLKIAKEP
ISLETPIGDE EDSHLGDFIE DKTAVIPLDA AIQTNLREAT TRVLSSLTPR EERVLRMRFG
IGMNTDHTLE EVGQQFNVTR ERIRQIEAKA LRKLKHPSRS RKLRSFLDDN
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