| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gdia_2869 |
|---|
| Symbol | |
|---|
| ID | 6976301 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Gluconacetobacter diazotrophicus PAl 5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011365 |
|---|
| Strand | - |
|---|
| Start bp | 3136361 |
|---|
| End bp | 3137833 |
|---|
| Gene Length | 1473 bp |
|---|
| Protein Length | 490 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 643392377 |
|---|
| Product | Carbohydrate-selective porin OprB |
|---|
| Protein accession | YP_002277215 |
|---|
| Protein GI | 209544986 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3659] Carbohydrate-selective porin |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 39 |
|---|
| Fosmid unclonability p-value | 0.206481 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGGTTCC TCTCTGTCCG GCGCATCGAC CGGTCCTTTC GTCGCGGACT GACGGCCTGC
GCGCTCAGCA CCCTTCTGCC GCATTGCATC CCCGCCGCAC ACGCGCAGGT GCTCGATAAC
GATATCGGCT CGGCCCCCAG CATCCGCGTC AGCACGCCGC TGCCCGCGGC GGCGTCGCTG
ACGACATCCG TTCCGCCCTT TTCCCAGCCC GAGGCGCTGT TTCCCAACCC GTTCGGGCTG
ACGAGATACC TGCGCGATCG CGGCATCAAT TTCCTGTTCG ACAACACCAA CGAATTCGCG
GGCGCGCTGA CGCAGCCGAC CCCCGGATTC CGGAATTATC GCCAGGGCGC CAGCAATGCC
GGTCAGTACG CCAACGAACT GGACATCAAC TGGGAGAAGC TGGCGGGCCT GGCCGGCTTT
GCCACCCATG TCATCACGGT GGGGCGGTAC GGCACCACCG CCAACCGCAT GTTCGGCGAC
TGGCTGGACC ACGCGTCGGA AGATTACGGC GGCGGCGGCA ACGTCGCGGT GCATCTGGTG
CTGGCCTATG GCGAGGAAAC CCTGTTCGGC GGCCGCCTGG CCATCGCGGC GGGGCGTATT
CCCCTGGCGT CGGATTTCGC GGCCAGCCCG CTGTTCTGCA ATTTCATGAA CGGCAGCATG
TGCGGCCGCC CCAAGGGCAT TACGGATTCG AACTACATGC CAGGCTATCC GGCCTCGACC
TGGGGGTTCC GCGTCCGGGG CCGACCCACC CGCGCCACCT ATATCCAGAC CGGTGTCTAT
CCGATGGAAA ACGGCGTCTA TGCCGTGGCC CAGCACCGCA CCGGGTTCAA GTTCAACGGG
TCCAACATCC TGGGCTACAC CATCCCCGTC GAAACGGGAT GGGAACCCGT GTTCGGGCAC
GGCACGCTGC CCGGACATTA CAAGGTCGGG GCGGCGGCGC TGGACGAACC GATGCCCGAC
AACCTGTTCG ACAACGACGG GCGGCCCTAC GCGCTGAGCG GCCGCGCGCC GCGCATGCAC
AGCGCGGGAT GGGAAAGCTG GGCGATGTTC GACCAGCGGC TCTATCACCC GAAAGGTGGC
GGCAAGGATG CCGGAATCAC GATGCTGACC GGCATCACCT ATAACGATCC GCATACGTCA
CTGCGGAACT ACGTGGGCTA TGTCGCCTTC CTGGACCGGG GTTTCTGGCC CTCGCGCCCC
TTCGACACGA TCGGCGCCGC GTTTACCTAT ACCAAAATCG ACCGTGGGGT GTCGCTGACC
GACGGGTACC TGATGAACGT GGGAAAGTCC CTGCCGAACC ACGCGACCGG CATCCAGGGC
CATGCCGAGG TGCTGGAAGT GAACTACGCC ATCCATGTCT GCCGTGGCGT GGTGTTCCAG
CCGGTGTTCG AATATTATTT CAACCCCAAC GCCCAGTCCA ACCTGCGCAA CGCCACGCTG
CTGGGCTTCA AGAGCCATAT CGAAATCCTG TGA
|
|---|
| Protein sequence | MRFLSVRRID RSFRRGLTAC ALSTLLPHCI PAAHAQVLDN DIGSAPSIRV STPLPAAASL
TTSVPPFSQP EALFPNPFGL TRYLRDRGIN FLFDNTNEFA GALTQPTPGF RNYRQGASNA
GQYANELDIN WEKLAGLAGF ATHVITVGRY GTTANRMFGD WLDHASEDYG GGGNVAVHLV
LAYGEETLFG GRLAIAAGRI PLASDFAASP LFCNFMNGSM CGRPKGITDS NYMPGYPAST
WGFRVRGRPT RATYIQTGVY PMENGVYAVA QHRTGFKFNG SNILGYTIPV ETGWEPVFGH
GTLPGHYKVG AAALDEPMPD NLFDNDGRPY ALSGRAPRMH SAGWESWAMF DQRLYHPKGG
GKDAGITMLT GITYNDPHTS LRNYVGYVAF LDRGFWPSRP FDTIGAAFTY TKIDRGVSLT
DGYLMNVGKS LPNHATGIQG HAEVLEVNYA IHVCRGVVFQ PVFEYYFNPN AQSNLRNATL
LGFKSHIEIL
|
|---|
| |