| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gdia_1646 |
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| Symbol | |
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| ID | 6975062 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gluconacetobacter diazotrophicus PAl 5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011365 |
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| Strand | + |
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| Start bp | 1833564 |
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| End bp | 1835909 |
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| Gene Length | 2346 bp |
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| Protein Length | 781 aa |
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| Translation table | 11 |
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| GC content | 74% |
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| IMG OID | 643391181 |
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| Product | ribonuclease R |
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| Protein accession | YP_002276038 |
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| Protein GI | 209543809 |
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| COG category | [K] Transcription |
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| COG ID | [COG0557] Exoribonuclease R |
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| TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases
[TIGR02063] ribonuclease R |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 40 |
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| Fosmid unclonability p-value | 0.353487 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGGGGGAC GGAACCCGTC CGACCCTCAG CCGACCGCCT GCCCGTCGCC CGACGTTCCG
CCGACCGATC CGCGCCCCCC GGCCCCGCCG CAGCCGGGCG GGGGCCTGCC GGACCGCGAG
GCGCTGCGCC GGTTCGTCAC CGAGGCCAGC GGCCGTGTCG GCAAGCGCGA GATCGCGCGC
GCCTTCAACC TGGGTCCCGA GCACAAGGCG GCGCTGCGCG CCATGCTGCG CGAACTGGCG
CTGGAGGGCA CGCTGGTCCC GGCCGGCGCC AGGCGCTTCC GCGCGTCCGC CGCCATGCCC
GAGGCCGCGT TGGTGCAGGT GACGGGCACC GACCCGGACG GCGACCCGAT CGCCCGCCCC
GTGGTGTGGG ATGGCGACGG CCCGGCGCCG GTCGTCTTCA TGCATCCCGA GCAGAAGGGC
CGCCCCGCGC TGGCGCCCGG CGAGCGGGTG GTGGCGCGGC TGAAGCGACT CGGCCCCGGC
CGGTACGAAG GCCGCACCCT GCGCCGCCTG ACCGATGCGC CGGGCCGCAT CGTGGGCGTG
TTCCGCCCGA CGACCCTGTA TGACGGCCCT GGGCCGCTAG CCCCGCCCCG CCGGCACGCC
GAGGCCGGGC GCCTGGTTCC GGCCGACCGC CGGGCGAAGG CGGAATGGAT CATCCCCGCG
GGCGAGACGA TGGGCGCCGA GGCCGAGGAG GTCGTCGTGG CCGAGCCGCT GCCGCTGGCG
GGGTCCGGCC TGAAACCCGC GCGGATCGTG GCCCGGCTGG GCCCGATGGG CGATGCGCGG
TCGGTCAGCC TGCTGGCGAT CCACACCCAT TCGATTCCCG ACCAGTTCCC CGCCGAGGCG
CTGTCCGAAG CGGAACGGGC GCGCGGCGTG TCGCCCGAGG GTCGCGAGGA TCTGCGCGAC
GTGCCGCTGA TCACCATCGA CGGGGAGGAT GCCCGGGATT TCGACGACGC GGTCTATGCC
GAGCCGGACG GCGACGGATT CCGCCTGATC GTCGCCATTG CGGACGTGGC GCATTACGTC
CGCCCCGGAT CGGCCCTGGA CCGCGAGGCG CGGCGGCGGG GCAATTCGGT CTATTTCCCC
GACCGGGTGG TGCCGATGCT GCCCGAGGCG CTGTCGAACG GATGGTGCTC GCTGCGCCCG
GGCGAGGATC GGGGCTGCCT GTTCGCCGAG ATCTTCATCG ACGCGGCGGG GAACAAGACC
CGCCACCGCT TCGGCCGCGG CATCATGCGC AGCGCCGCGC GCCTGACCTA CGACCAGGCC
CAGGCGATCG TCGGAAACGT GGAGGAGAGC CAGCAGGAAA CCGGCCTGCC GGACGGGCTG
ATCAACACAT TGTTTACGGC GTGGCGCGCA CTGTCGACGG CGCGCGCGCG GCGTGGCACG
CTGGATCTCG ATGTGCCGGA GCGCGTGGTG CGACTCGACA CGTCCGGGCG GATCACCGCC
ATCGAACCCC GCCCCCGTCA CGACAGCCAT CGCCTGATCG AGGAATTCAT GGTGCTGGCC
AATGTTGCCG CCGCCGAGGA ACTGGAACGA AGGCGCCGGC CCTGCCTGTA TCGTATCCAC
GCGCCGCCTT CGCCCGAACG GGCCGAGGCG ATGCGCGACA GCCTGTCGGC CATGGGGTTC
GACCTGCCGC CGCCCGGGGC GCTGCGCGCG CGCGACCTGG GCGCGGTGCT GGCGCGCGCC
GCGCAGGGCG AGGCATCCGG CCCCGCCAGC GGCACGCCCG TCAGCGGAAC CCTGGTCAGC
GAGACGATCC TGCGGGCGCA GAGCCAGGCC GAATACAGCC CCGACAATAT CGGCCATTTC
GGCCTGGCGC TGCCGGCCTA TGCCCATTTC ACCAGCCCGA TCCGCCGCTA TGCCGACCTG
CTGGTGCATC GCGCCCTGAT CGGGATGGGC ACGCAGCCGG CCGACGGCAT GCCGGCCGCC
GACGCCGCAT GCCTGGACGA GATCGGCGAG CAGGTCAGCA CCGCCGAGCG CCGCGCCGCG
CTGGCCGAGC GCGAGACGAC GGAACGCTAT GTCGCCGCAT GGCTGGCGGA CCGGGTCGGG
GCGGAATTTT CCGGCCATGT GTCGGGCGTA ACCCGGTTCG GCGCGTTCGT GACATTGACG
CAGACCGGCG CCACCGGTCT GGTACCGGTA TCGACCCTGC CCGACGATGT CTGGACGCAT
GACGAAAAGA CCCAAACCCT GCGTGGCCGC CACGGTGGAC TGGCCTTGCG GCTGGGCCAG
CCGGTCACGG TACGGCTGGT CGAGGCGACA CCGGTGACCG GCGGGCTGCT GTTCGCCCTG
GTGGGCGCGA ATCCAGCGGC GGCGTCCGGC CCGGCGCGCC GCGCGCGTGG CACGCGCCCA
CGCTGA
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| Protein sequence | MGGRNPSDPQ PTACPSPDVP PTDPRPPAPP QPGGGLPDRE ALRRFVTEAS GRVGKREIAR
AFNLGPEHKA ALRAMLRELA LEGTLVPAGA RRFRASAAMP EAALVQVTGT DPDGDPIARP
VVWDGDGPAP VVFMHPEQKG RPALAPGERV VARLKRLGPG RYEGRTLRRL TDAPGRIVGV
FRPTTLYDGP GPLAPPRRHA EAGRLVPADR RAKAEWIIPA GETMGAEAEE VVVAEPLPLA
GSGLKPARIV ARLGPMGDAR SVSLLAIHTH SIPDQFPAEA LSEAERARGV SPEGREDLRD
VPLITIDGED ARDFDDAVYA EPDGDGFRLI VAIADVAHYV RPGSALDREA RRRGNSVYFP
DRVVPMLPEA LSNGWCSLRP GEDRGCLFAE IFIDAAGNKT RHRFGRGIMR SAARLTYDQA
QAIVGNVEES QQETGLPDGL INTLFTAWRA LSTARARRGT LDLDVPERVV RLDTSGRITA
IEPRPRHDSH RLIEEFMVLA NVAAAEELER RRRPCLYRIH APPSPERAEA MRDSLSAMGF
DLPPPGALRA RDLGAVLARA AQGEASGPAS GTPVSGTLVS ETILRAQSQA EYSPDNIGHF
GLALPAYAHF TSPIRRYADL LVHRALIGMG TQPADGMPAA DAACLDEIGE QVSTAERRAA
LAERETTERY VAAWLADRVG AEFSGHVSGV TRFGAFVTLT QTGATGLVPV STLPDDVWTH
DEKTQTLRGR HGGLALRLGQ PVTVRLVEAT PVTGGLLFAL VGANPAAASG PARRARGTRP
R
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