Gene Gdia_1582 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagGdia_1582 
Symbol 
ID6974992 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGluconacetobacter diazotrophicus PAl 5 
KingdomBacteria 
Replicon accessionNC_011365 
Strand
Start bp1757958 
End bp1759358 
Gene Length1401 bp 
Protein Length466 aa 
Translation table11 
GC content68% 
IMG OID643391113 
ProductRNA polymerase, sigma 54 subunit, RpoN 
Protein accessionYP_002275976 
Protein GI209543747 
COG category[K] Transcription 
COG ID[COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog 
TIGRFAM ID[TIGR02395] RNA polymerase sigma-54 factor 


Plasmid Coverage information

Num covering plasmid clones37 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones63 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCGGCCC AGCCCCGTCA GGAATTCAAG CAGAACCAGG GACTGTTCAT GAGCGCGCGC 
ATGCGCCAGT CCATCCAGAT CCTGCAATTG TCCAATGCCG AGCTCCATGA ATTCCTGGAC
GCGGAGGTCG AGAAGAATCC GCTTCTGGAG CGCGATCCGA CCACCTCCGC CCCCCTGGCG
GAGAGGCCCG GCCTTGCCGC GCCGCCGCCC ATGATGCGCG CGCCCGGCGC GACGGGGGAT
GCCGGGCGCT GGACGTCCGA CAGCGGCCTG GATGATGACG GGACGGGGCG CCTGGCCGAA
TCCGCCCCGG CGTTGCGCGA CGTGATGTTC GAACAACTGG TTCTGTCCGG CTGCACGACG
ACGGAGCGGG AAATCGGCGC GCACCTGATC GCCGCACTCG ATCCGGCGGG ACGGCTGGCC
GGCGGCGCCA CCGACGACAT CGCCGCCACG TTGCAGGTCA CGCTGCGGGA CGTCGAGGCC
ATCCGGCAGC GCATGATGCG TTTCGACCCG CCCGGCCTGT TCGCCACGTC GCTTCGGGAA
TGCCTGGCGG CCCAGTTGCA GGAACGCAAC CGTTTCGACC CGGCCATGGC GCGCCTGCTG
GACAATCTGG ACCTTCTGGC CCGGCACGAC CTGAAGCGCC TGCGCCAGGC CTGCGACGTC
AGCGCCACGG ACCTGGAGGA CATGATTGCC GAATTACGCA CACTCGACCC CAAGCCCGGG
GCGGAACATG GCAGCACCCT GACCGTCATC GTCCCGGACA TCCTGATGGA GCAGACGGCC
GAGGGCGGAT GGACGCTGGA GCTGAACCCC GAGAGCACCC CCCGTGTCGT GCTGAACAGC
GCGCTGAGCA CCCGCATGTC GCTGCGCGCC CATGGGGCGG AGCGGACATA CCTGAATGAC
ACTCTGACCA GCGCGAACTG GCTGATCCGC GCGCTGCAGC AGCGCAGCAT GACCATCCTG
CGCGTCTCGA CCGAGATCCT GCGCCGACAG GAGGATTTCC TGCAGCACGG TCCGCAGGCC
CTGCAGCCGC TCAACCTCCG GACGGTCGCC GAGGCGCTGA ACATTCACGA AAGCACGGTC
AGCCGCGTGA CGGCGAACAA GTACGTCGCG ACCCCGCGCG GCGTGCTGCC GCTGAAATTC
TTCTTCGTGG CGGCCATGAC CGGAAATGAC GGCGAAATCC GCAGCAACGT TGCGATCCAG
AGCGTGATCC GGCGCATGAT CCAGGGCGAA CGCCCCGATG CCGTCCTGTC CGACGAGGCG
ATTTCCCTGA CCCTGCGCCG GCAGGGCATC GACATCGCAC GCCGCACGGT CGCGAAATAT
CGCGAGGCGA TGGGCTTTCC CAATTCCCTC CAGCGGCTTC AGCGCGCCGC CGAGACCGCC
TCGCCCCCCA ACCGGCGATA G
 
Protein sequence
MSAQPRQEFK QNQGLFMSAR MRQSIQILQL SNAELHEFLD AEVEKNPLLE RDPTTSAPLA 
ERPGLAAPPP MMRAPGATGD AGRWTSDSGL DDDGTGRLAE SAPALRDVMF EQLVLSGCTT
TEREIGAHLI AALDPAGRLA GGATDDIAAT LQVTLRDVEA IRQRMMRFDP PGLFATSLRE
CLAAQLQERN RFDPAMARLL DNLDLLARHD LKRLRQACDV SATDLEDMIA ELRTLDPKPG
AEHGSTLTVI VPDILMEQTA EGGWTLELNP ESTPRVVLNS ALSTRMSLRA HGAERTYLND
TLTSANWLIR ALQQRSMTIL RVSTEILRRQ EDFLQHGPQA LQPLNLRTVA EALNIHESTV
SRVTANKYVA TPRGVLPLKF FFVAAMTGND GEIRSNVAIQ SVIRRMIQGE RPDAVLSDEA
ISLTLRRQGI DIARRTVAKY REAMGFPNSL QRLQRAAETA SPPNRR