| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gdia_1006 |
|---|
| Symbol | |
|---|
| ID | 6974403 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Gluconacetobacter diazotrophicus PAl 5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011365 |
|---|
| Strand | - |
|---|
| Start bp | 1133531 |
|---|
| End bp | 1134211 |
|---|
| Gene Length | 681 bp |
|---|
| Protein Length | 226 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 643390528 |
|---|
| Product | conjugal transfer protein TrbF |
|---|
| Protein accession | YP_002275404 |
|---|
| Protein GI | 209543175 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3701] Type IV secretory pathway, TrbF components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 65 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTCCGCC GTCCCACCAT ACGTTTCGGC AGAACACCGG AACCGGAAAC ACCCTATCAT
AAAGCCGCAC AGGTCTGGGA CGACCGCATC GGCTCGGCCC GCGTCCAGGC CCGCAACTGG
CGGCTGGCTT TCTTCGGTTG CCTGGCATTG AGCGGCGGGC TCGCCGTCGG GCTGGTCTGG
CAGTCGGCGC GGGGCACCAT TACGCCGTGG GTGGTGCAGA TCGACCACCT TGGCCAGGCG
CTGGCCGTGG GGCCGGCGAC CGCCGCCTAT CGGCCGACCG ATCCGCAGAT TGCCTGGTAT
CTGGCGCGCT TCATCTCCGA GGTGCGCGGC ATCCCGGCCG ATCCGGTGGT CCTGCGGCAG
AACTGGCTCG ACGCCTACAA CTACGTCACC GATCGCGGGG CGCTGGCCCT GAACGATTAT
GCCCGCACCA ATGATCCGTT CGGCAAGTTC GGAAGGATGC AGGTGGCGGT CGAGATCGCC
AGCGTGATCC GTGCCTCCGA CGACAGTTTC CGGGTGGAGT GGATTGAGCG CCGCTATGTC
GATGGCGCGC TGGCCTCGAC GGAACGCTGG GGCGCGCTCC TGACCATTGT CGTCACCATC
CCCACCGATG CCGAACGTCT GCGCAAGAAC CCGCTCGGCA TCTACATCCA CGCCCTCAAC
TGGTCCAGGG AACTCGGCTG A
|
|---|
| Protein sequence | MFRRPTIRFG RTPEPETPYH KAAQVWDDRI GSARVQARNW RLAFFGCLAL SGGLAVGLVW
QSARGTITPW VVQIDHLGQA LAVGPATAAY RPTDPQIAWY LARFISEVRG IPADPVVLRQ
NWLDAYNYVT DRGALALNDY ARTNDPFGKF GRMQVAVEIA SVIRASDDSF RVEWIERRYV
DGALASTERW GALLTIVVTI PTDAERLRKN PLGIYIHALN WSRELG
|
|---|
| |