Gene Gdia_0493 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagGdia_0493 
Symbol 
ID6973889 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGluconacetobacter diazotrophicus PAl 5 
KingdomBacteria 
Replicon accessionNC_011365 
Strand
Start bp542153 
End bp544285 
Gene Length2133 bp 
Protein Length710 aa 
Translation table11 
GC content65% 
IMG OID643390027 
Productdiguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) 
Protein accessionYP_002274904 
Protein GI209542675 
COG category[T] Signal transduction mechanisms 
COG ID[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain 
TIGRFAM ID[TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.405196 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones25 
Fosmid unclonability p-value0.000791154 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGAAACATT CCGCTTCGTC ATCCCTTTTG ATGCGGGATC TTTCCACGCC AGGCCCTACC 
GTTGGCCCGT CGGACAAGGG CGAACGGATC TTCGAACTGT TCCGGGACGA CCCGGAATTG
ATGCTGGTCG CCGTCGTCGA TGAAGGCGGC GCGCCGATCG GGCTGGTGGA ACGGCAGGCC
TTTTTCGCCA AGGTTTCGGG GCAGTTCGGG CACGCGCTGT TCGCCGGGCG CCCCGTGGCC
CTGCTTATGG ACGACAGGCC CGTGATCGTG GATGCCGCGG TCTCGTCGAC GGATTTCACG
TCCATGACGA TCACGGCGCA GTCGTCGGAC GTGCTGCGCG GCTACATCGT CGTTGCCGGG
GGGCGGTATC TGGGCACGGG AACGGCCCTG GACCTGATCA ATGCCTCGCA TTCCAATGCG
GTCGCGTCCG CCGCGAACCT GCATGAAACG GCCGAGGAAT TGCGCAAGGC GAACAGGAAG
ATCCTGCGCG ACAAGCTGTT CATGGATACG ATCGTCGAAA ATATCCCCTC GGCCCTCGTG
GTCAGGTCGG TGCGCGACGA CCGGCTGGTC CTGATCAACC GCGCGGCCGA ACTGATGACC
GGCCGCGAGC GGAGCGAACT GGTCGAGCAC ACCGCCGCCG ACGCCTTCAC CGAAACCGAG
ATCGGCCACG CCCTGGTGCA TCCCGAGGGC ACGCGGCGGG AGGGCGTTTC CGAGAGCCTG
CTGCGCAACC GCGCGGGGGA CATGCGCGCG GTCGCGACGC GCTACGTCAC GATCGCGGAC
GAACGCGGCG ACGCGCGCTG GGAACTGTGC GTGGCCGATG ACGTCACCGA ACGGCGGCAG
GCCCGCCAGC AGGTCGAACG GCTGGCGCAT TACGACCCGC TGACCGGACT GGCCAACCGC
GCCCTGTTCG GTGCGCGGCT CGACGGCGTG TGCGTGGCGG GGCACGAGGC CATCCTATTG
TGCATCGACC TGGATTATTT CAAGACGGTC AACGACCTCT ACGGTCACGC GGCGGGCGAT
GCCCTGCTTC GCCTGGTGGC CGACCGCTTG CGGGCCTGCA GCCGTCCCGA CGACCTGATC
GCGCGCCTGG GCGGCGACGA ATTCGCCATC ATCTGGCCCA ACGTGCCGGA AAAGGAGGAA
CTCGCCCATC GCGCGGGTGA AATCGTCGAG ACGATCAGCC GGCCCTACGT CATCGACGGC
CAGCACGTCG CGATCGGCGC CAGCATCGGA TCGGCATCCT ATCCGGCGGA TGCGGGTTCA
TCCGATCTGC TGCGGCAACA TGCCGATATC GCGCTGTACA AGGCCAAGGC GCTGGGGCGG
AACTGCTTTC ATTCGTTCGA TGCCGGCCTC AGCTACGAAA TGCGCAACAA GGCCCGGCTG
GGCGACGAGC TGCGCGCGGC CATCGGAAGC AGCCAGATCT GCCTGCATTT CCAGCCGCTT
TACACCATGC CCGACAACCA GATCGCCGCC TGCGAGGCCC TGGTGCGCTG GAACCACCCC
GTACGCGGGA TGATCCCGCC GGATCAGTTC ATCGGCCTGG CCGAGGAAAA CGGCCTGATC
CACGAACTGG GCGAGTGGGT CCTGCGTGCC GCGTGCCGCG AGGCCGTCTG CTGGCCGCCG
CACGTCAAGG TCGCCGTCAA TGTTTCGCCG GTCCAGTTCC GCAATTCCCG GTTCATGGCC
ATCGTGCAGT CGGCCCTGAT GGAAGCGGGC CTCGTGCCCC ACCGGCTGGA AGTCGAGATC
ACGGAAAATA TCTTCGTGCA GAACAGCGCG GTCAACCGCG ACATCCTGCG ACAGCTCGCC
GACATGGGAT GCAGCGTCGT CCTGGACGAT TTCGGAACCG GCTATTCCGC CCTCAGCTAC
CTGCGGCTGT TCTCGTTCCA GAAAATCAAG ATCGATCGTT CCTTCGTCAA GGAATTGCCG
GAAAAGAGCG CATCGGGCAT CATCCAGGCC ATTGTCAGCC TGGCCCAGAG CATGGACATT
CCCACCACCG CCGAGGGCGT GGAAACCCAG GAACAGTGGG CGAGGCTGCA CGCCATGGGA
TGCAGCGAGG CGCAGGGTTT CCTGCTGGGG CGGCCCGAAC CGGTCGCCGC CATCCGCGAG
CGCCTCGGCG TCAGGGACGT CGTCATGTCC TGA
 
Protein sequence
MKHSASSSLL MRDLSTPGPT VGPSDKGERI FELFRDDPEL MLVAVVDEGG APIGLVERQA 
FFAKVSGQFG HALFAGRPVA LLMDDRPVIV DAAVSSTDFT SMTITAQSSD VLRGYIVVAG
GRYLGTGTAL DLINASHSNA VASAANLHET AEELRKANRK ILRDKLFMDT IVENIPSALV
VRSVRDDRLV LINRAAELMT GRERSELVEH TAADAFTETE IGHALVHPEG TRREGVSESL
LRNRAGDMRA VATRYVTIAD ERGDARWELC VADDVTERRQ ARQQVERLAH YDPLTGLANR
ALFGARLDGV CVAGHEAILL CIDLDYFKTV NDLYGHAAGD ALLRLVADRL RACSRPDDLI
ARLGGDEFAI IWPNVPEKEE LAHRAGEIVE TISRPYVIDG QHVAIGASIG SASYPADAGS
SDLLRQHADI ALYKAKALGR NCFHSFDAGL SYEMRNKARL GDELRAAIGS SQICLHFQPL
YTMPDNQIAA CEALVRWNHP VRGMIPPDQF IGLAEENGLI HELGEWVLRA ACREAVCWPP
HVKVAVNVSP VQFRNSRFMA IVQSALMEAG LVPHRLEVEI TENIFVQNSA VNRDILRQLA
DMGCSVVLDD FGTGYSALSY LRLFSFQKIK IDRSFVKELP EKSASGIIQA IVSLAQSMDI
PTTAEGVETQ EQWARLHAMG CSEAQGFLLG RPEPVAAIRE RLGVRDVVMS