Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Gdia_0338 |
Symbol | |
ID | 6973732 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Gluconacetobacter diazotrophicus PAl 5 |
Kingdom | Bacteria |
Replicon accession | NC_011365 |
Strand | + |
Start bp | 379403 |
End bp | 380779 |
Gene Length | 1377 bp |
Protein Length | 458 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 643389870 |
Product | RNA polymerase factor sigma-54 |
Protein accession | YP_002274749 |
Protein GI | 209542520 |
COG category | [K] Transcription |
COG ID | [COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog |
TIGRFAM ID | [TIGR02395] RNA polymerase sigma-54 factor |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.0175077 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 38 |
Fosmid unclonability p-value | 0.141122 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGACGATCG GCCCCAGGCT CGCGCTCCGG CAGGCCCAGA CCCTCGTCAT GACGCCGCAA TTGCGGCAGG CGATCCACCT TCTGCAATTG TCCAACCTCG ACGCCTGTTC GTTCATCGAA CAGGAACTGG AACGCAATCC GCTGCTGGAG CGCGCGAACC TGGCGGGGCT CGAGGAACTC CGGCCCAAGG TCGTGGCCCA CGGTGCGCGC CATGACCCTC GCCTGGAACG GGTCCCCGAC CAGGACTGGG CCGCCACAAC GGGGACCCTG CCCGGCCCGG CCCCCTCGCT GCACGAACGG CTGGCGCAGC AGGTGCGGCT GTCGTGGCGC GATGCCGGCG ACCGGCTGGT AGGGGCGTAT CTGATCACCC TGCTGGACGC CGACGGGCGG CTCGTCCCCC CGACGGCGGT CATCGCCCAG TCCCTGGGCA CCACGTTCGA CCATGTCGAG CGTGTGCGCC AGACCATGAT GCAGTTCGAG CCGACGGGCC TGTTCGCCCA CGATCTGGGC GAATGCCTGG CCGCCCAGTT GCGCGAACGC GACCGGCTGG ACCCGGCGAT GGCCGTCCTG CTGCGGCACC TGGACCTGCT GGCCCGGCGC GACCTGCGCC GGCTGCAGGG TCTGTGCGGC GTCGATGCCG AGGACTTGGC GGACATGATT GCCGAGGTCC GCACCCTGTC GCCCCGCCCG GCCCGGGATT TCGGCGATCC GGCGGCCTGT TCCGTCATCC CGGACGTCCT GTTGCAGCCC GCGCCGGACG GGGACTGGAT GCTGGAACTC AACCCCGAGA CCATGCCGAG CGTGGTGGTG AATTCCGCAC TGAGCACCCG GGTGGCGCTG CGGGCCCGGC GCGAGGACAG GCCGTTCCTG AACGAGCGCC TGGCCAGCGC CAACTGGCTG GTGCGCGCCC TGCAGCAGCG GGCCGACACG ATCATCCGCG TCGCAACCGC GATCATGCGC CGGCAACGCG GCTTCCTGGA TCACGGGATC GGCCACCTGC GCCCGCTGGT GCTGCGCGAT ATCGCCGAAA CGGTCGGGCT GCACGAAAGC ACCGTCAGCC GGGTGACGGC GAACAAGTAC ATCGCCACCC CGCGCGGCCT GTTCGAGCTG AAATATTTCT TCACCACCGC GATCCCGGGC CGCGCGGGCG GCGCCGACCA CAGCGCCGAG GCCATCCGCC ATCGGATCAA GACCTTGATT TCACAGGAAT CTGATGGAAA AATCCTGTCC GACGATGCAA TCGTGACCCG GTTACGCAAG GAAGGAATAG ACATTTCTCG CCGAACCGTG GCCAAATACC GGGATGCGTT GAGGATACCC AACTCGGCGC AGAGAAAACG GGACAAGGCC CTCATCGGCC TGAAACCGGA AGCTTGA
|
Protein sequence | MTIGPRLALR QAQTLVMTPQ LRQAIHLLQL SNLDACSFIE QELERNPLLE RANLAGLEEL RPKVVAHGAR HDPRLERVPD QDWAATTGTL PGPAPSLHER LAQQVRLSWR DAGDRLVGAY LITLLDADGR LVPPTAVIAQ SLGTTFDHVE RVRQTMMQFE PTGLFAHDLG ECLAAQLRER DRLDPAMAVL LRHLDLLARR DLRRLQGLCG VDAEDLADMI AEVRTLSPRP ARDFGDPAAC SVIPDVLLQP APDGDWMLEL NPETMPSVVV NSALSTRVAL RARREDRPFL NERLASANWL VRALQQRADT IIRVATAIMR RQRGFLDHGI GHLRPLVLRD IAETVGLHES TVSRVTANKY IATPRGLFEL KYFFTTAIPG RAGGADHSAE AIRHRIKTLI SQESDGKILS DDAIVTRLRK EGIDISRRTV AKYRDALRIP NSAQRKRDKA LIGLKPEA
|
| |