Gene Gdia_0135 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagGdia_0135 
SymbolispG 
ID6973527 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGluconacetobacter diazotrophicus PAl 5 
KingdomBacteria 
Replicon accessionNC_011365 
Strand
Start bp149294 
End bp150442 
Gene Length1149 bp 
Protein Length382 aa 
Translation table11 
GC content66% 
IMG OID643389669 
Product4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 
Protein accessionYP_002274550 
Protein GI209542321 
COG category[I] Lipid transport and metabolism 
COG ID[COG0821] Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis 
TIGRFAM ID[TIGR00612] 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones40 
Fosmid unclonability p-value0.23401 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCAGCT ATCGTCCCTA TCAGTCCATC GAGCGCCGCA AGTCGCGGCA GATCCATGTC 
GGCAAGGTTC CGGTCGGCGG CGACGCACCC ATTTCGGTGC AGACCATGAC CAATACCCTG
ACGACGGATG CCGAAGCGAC GATCGCGCAG ATCCGCAGGG CCGAACTGGC GGGCGTCGAT
ATCGTGCGCG TCTCCTGCCC CGACGAGGAA AGCACCGCCG CGCTGGCCGA GATCGTGCGC
GAGGTCAACG TGCCGATCGT TGCCGACATC CATTTCCACT ACAAGCGCGC GATCGAGGCC
GCCCAGGCCG GCGCGGCCTG CCTGCGCATC AATCCCGGCA ATATCGGCAG CGCCGAGCGT
GTGCGTGAGG TCGTGAAGGC CGCGCGTGAG CATGGCTGCT CGATCCGCAT CGGGGTGAAT
GCCGGGTCGC TGGAAAAGCA CCTGCTGGAA AAATACGGCG AACCCAACCC CGACGCGCTG
GTCGAAAGTG CGCTGGAACA CGCCAAGATC CTGCAGGATC ACGATTTCCA TGAATTCAAG
ATCAGCGTGA AGGCGTCGGA CGTCTTCCTG GCCGTGGCCG CCTACCAGCA ACTGGCCGAG
GTCTGCGACC ATCCGCTGCA TATCGGCATC ACCGAGGCGG GCAGCAAGCG CGCCGGCACG
GTCAAGTCCT CGATCGGCCT GGGCAACCTG CTGTGGGCCG GCGTGGGCGA TACCATGCGC
GTCTCGCTGT CGGCGGACCC CGAGGAAGAG GTCCTGGTGG GCTGGGATAT CCTGAAATCC
CTGGGCCTGC GCCATCGCGG CGTGAAGATC ATTTCCTGCC CCTCATGCGC GCGGCAGGGG
TTCAACGTCA TCCAGACCGT GCAGACCCTG GAGGAGCGCC TGGCGCACAT CCAGACGCCG
CTGACGCTGT CCATCATCGG CTGCGTGGTC AACGGCCCCG GCGAGGCGCT GATGACCGAT
ATCGGCGTGA CCGGCGGCGG ATCGGGCCGC CACATGGTCT ACGCCGCCGG CCGTCAGGAC
CATACCGTTC CGGCCGATTC GATGATCGAG CACATCGTCG AGCTGGTCGA GAAGAAGGCC
GAGATCCTCC GTGCCGAGGA AGCGGCCGCC AAGGCCGAGG CCGAAGCGGC GCTGGCCCCC
GCGCAATAA
 
Protein sequence
MSSYRPYQSI ERRKSRQIHV GKVPVGGDAP ISVQTMTNTL TTDAEATIAQ IRRAELAGVD 
IVRVSCPDEE STAALAEIVR EVNVPIVADI HFHYKRAIEA AQAGAACLRI NPGNIGSAER
VREVVKAARE HGCSIRIGVN AGSLEKHLLE KYGEPNPDAL VESALEHAKI LQDHDFHEFK
ISVKASDVFL AVAAYQQLAE VCDHPLHIGI TEAGSKRAGT VKSSIGLGNL LWAGVGDTMR
VSLSADPEEE VLVGWDILKS LGLRHRGVKI ISCPSCARQG FNVIQTVQTL EERLAHIQTP
LTLSIIGCVV NGPGEALMTD IGVTGGGSGR HMVYAAGRQD HTVPADSMIE HIVELVEKKA
EILRAEEAAA KAEAEAALAP AQ