Gene Gdia_0109 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagGdia_0109 
Symbol 
ID6973500 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGluconacetobacter diazotrophicus PAl 5 
KingdomBacteria 
Replicon accessionNC_011365 
Strand
Start bp121799 
End bp125269 
Gene Length3471 bp 
Protein Length1156 aa 
Translation table11 
GC content69% 
IMG OID643389642 
Producttranscription-repair coupling factor 
Protein accessionYP_002274524 
Protein GI209542295 
COG category[K] Transcription
[L] Replication, recombination and repair 
COG ID[COG1197] Transcription-repair coupling factor (superfamily II helicase) 
TIGRFAM ID[TIGR00580] transcription-repair coupling factor (mfd) 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones36 
Fosmid unclonability p-value0.174112 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGGGCAC CCGGGACGGA ACACGCCGGC TGGGCCACCA TCTGGGGGGC ACCGGACGGA 
TTCGACGCCT TTCTGGTGGC ACGCCGGGCC CGCGAGCATG ACGGGCCCGT GCTGCATGTC
GCACGGGACG ATGCCGGCAT GGCGCGGATC GGCGAATTGC TGTCCTTCGT CGCCCCCAAT
GCCGAAATCC TGCGTTTTCC GTCCTGGGAC TGCCTGCCGT ACGATCGCGT GTCGCCCAAT
CCGGCGATCG TCGCCGAACG CGTCGCCACC CTGACGCGGC TGCTGGAACC GGCGACGGCG
CCGCGCATCG TGCTGACCAC GGTCGGCGGC CTGGTCCAGC GCGTGGCGCC CCGCGCCGCC
TTTCGCGGCC AGTCCCTGAC CCTGGCCGCC GGCGACAGCC TGGACCAGGC CCTGCTGATC
GACCTGCTGG TGGCCGCCGG CTACAACCGC ACCGACACGG TGATGGAACC GGGGGAATTC
GCCACCCGCG GCGGCATCTT CGATATCTTC CCCTCGGGCG AGGCCGAGCC GGTGCGGCTG
GACCTGTTCG GGGACGAGGT CGAGAACATC CGCCGCTTCG ACCCCGCCAC CCAGCGCTCG
TCGGACCGGC TGGACCGGTT CGTCATGCGT CCGGTGGCCG ATTTCACCCT GGACCAGGCC
AGCATCTCGC GCTTCCGGAC CGGCTGGCGC GACCTGTTCG GGCCGGCGGC GGCCTCCGAT
CCGCTTTATG AACATGTGTC GGACGGGCGG CGCCATGCCG GGCTGGAACA TTGGCTGCCG
CTGTTCCACG AGCATCTGGA AACGCTGGTC GATTACCTGC CGGGCGTGTC GATCATCCTG
GCCCATCAGG TCGAGGACGT CCTGGCCGCG CGGCTGGAGA TGATCGCCGA TCATTTCGAG
GCCCGGCGCC AGCCGGTGCG CGAGGGCGAA GTCCCGTACC GCGCGCTGCC GCCCCACCTG
ATGTACCTGG ACCGCAAGGG ATGGGACGGA ATCCTGTCCG GCCACCCGGT GATGCTGTTC
AGCCCCTTCG CCCGTCCGGA CAATGCCGGG GGCGTGGATG CCGGGGGGCG GCCGGGCATC
CTGTTCGCCA GCGTCGCGGG GGGCGGGGCG CGTGAGAACG TGTTCGCGAT GCTGGATACG
CAGGTCCGGC AATGGGCCGA GACCGGGCGC CGCGCCTACG TGTCGGCCTG GACCCGGGGA
TCGCGCGAGC GGATCGCGAC ATTGCTGCGC GAGCACGGCA TGCGGGTCGA GACGTTCGAT
GGCTGGGCCC GCGCGCAGGA TCTGCCGCCC GGCACCGTGG GCCTGCTGAC GCTGGGCCTG
GAACGTGGCT TCATCGCCGA CAACCTGGCC TTCGTGTCCG AGCAGGACCT GCTGGGCGAG
CGGATTTCCC GCCCGCCGCG CCGGCGCAAG AAGGCCGACC AGTTCATTGC CGAGGCGTCG
GAAATCGCCG AGGGCGACCT GGTGGTCCAT CAGGATTACG GCATCGGCCG CTATGACGGG
CTGGAGACGA TCGGCGTCGG CACCGCGCCG CATGACTGCC TGCGCCTGAT CTATGACGGG
AACGAGAAAC TGTTCCTGCC GGTCGAAAAT ATCGAACTGC TCAGCCGCTT CGGGTCCGAC
CAGGCGGGGG TGGCGCTGGA CAAGCTGGGC GGGGCCTCGT GGCAGAACCG CAAGGCCCGG
ATGAAGCAGC GCATCCGCGA CATGGCGGGC GAACTGATCC GCACCGCCGC CCTGCGCGCG
TTGCGCGAGG CCCCCAGCAT GACCCCGGCC GAGGGGATGT GGGACGAGTT CTGCGCGCGC
TTCCCCTTCG TCGAGACCGA GGACCAGTCC CGCGCCATCG CCGACGTGCT GGAGGACATG
GGGTCGGGCC GCCCGATGGA CCGGCTGGTG TGCGGCGATG TGGGCTTCGG CAAGACCGAG
GTCGCGCTGC GCGCGGCCTT CGTCGCCGCC CTGTCCGGCG CCCAGGTGGC GGTGGTGGTG
CCGACCACGC TGCTGGCGCG ACAGCATTTC CGCACCTTCT CGGCCCGTTT CTCCGGCCTG
CCGATCACGG TGGCGCAATT GTCGCGCATG GTCACGCCCA AGGAGGCGAC CGCCGTGCGC
AAGGGGCTGG CCGACGGCAC GATCAACATC GTCATCGGCA CCCACGCGCT GCTGGCCAAG
GGCGTGCAGT TCGCCGACCT GGAACTGCTG ATCATCGACG AGGAGCAGCA TTTCGGCGTC
GCGCACAAGG AGAAGCTGAA GGCGCTGCGC GAGGACGTGC ATGTGCTGAC CCTGTCGGCC
ACCCCGCTGC CGCGTACTTT GCAACTGGCC CTGACCGGCG TGCGGGAGAT GAGCCTGATT
GCGACCCCGC CCACCGACCG GCTGGCGGTG CGGACCTTCA TCATGCCGTT CGACAGCGTG
GTGATCCGCG AGGCGATCCA GCGCGAGCGG TTTCGCGGCG GGCAGATCTT CTGCGTCGTG
CCCCGGATCG AGGATCTGGA CCGCATGGCC GCCCGCCTGC AGGACATCGT GCCCGACGCG
CGCCTGGTCC AGGCACATGG CCGCCTGACC CCGACCGAGC TGGAACGGGT GATGACCGAA
TTCAGCGACG GCAAATACGA CATCCTGCTG TCCACCAACA TCGTGGAAAG CGGGCTGGAC
ATGCCGGCGG TGAACACGCT GATCATCCAT CGCGCGGACA TGTTCGGGCT GGGGCAGCTC
TATCAGTTGC GCGGCCGCGT CGGGCGCGGC AAGCAGCGGG GCTATGCCTA CCTGACCTGG
CCGCAGACCC ATGTCCTGTC GGCCGCCGCC GAAAAGCGGC TGGAGGTCAT GCAGACCCTG
GATACGCTGG GGGCGGGCTT TACCCTGGCG TCGCACGACC TGGACCTGCG CGGGGCGGGC
AACCTGCTGG GCGACGAGCA ATCGGGCCAT ATCCGCGAGG TCGGGATCGA GCTGTACCAG
CAGATGCTGG AGGACGCGGT CGCGGAACTG CGGGTCGAAA AGGGCCGGCG CAAGGCGCAG
GACCGCGACT GGACCCCGAA CATCATCCTG GGCCTGCCGG TTCTGATCCC CGAAACCTAC
GTGCCCGACC TGCCGGTCCG GCTGGGCCTG TACCGGCGCA TCGCCGGGCT GGCCAATGAC
GCCGAAATCG AGGCGATGGA GGCGGAACTG GTCGACCGGT TCGGGACGAT GCCGGACGAG
GTGCGCAACC TGCTGGACGT CGTCGCGATC AAGCGCCTGT GCCGCGAGGC CGGGGTCGAG
CGGCTGGAGG CCGGGCCGAA GGGCATGGTG ATCCAGTTCC GCGGTAACAG TTTCGCCAAC
CCGGGTGGAT TGGTGACCTG GATCGCGGCA CATAAGGAAG GCAATGTCCG CCTGCGCCCG
GACCACAAGC TGGCCCTGGT GCGGGAGATG ACGAACGCGC AGCGCATTCG CCTGGCCAAG
GACACGGTCC AGACGCTGGG CCGCCTCGCG GGTCAGGAGA AGGCGGCCTG A
 
Protein sequence
MRAPGTEHAG WATIWGAPDG FDAFLVARRA REHDGPVLHV ARDDAGMARI GELLSFVAPN 
AEILRFPSWD CLPYDRVSPN PAIVAERVAT LTRLLEPATA PRIVLTTVGG LVQRVAPRAA
FRGQSLTLAA GDSLDQALLI DLLVAAGYNR TDTVMEPGEF ATRGGIFDIF PSGEAEPVRL
DLFGDEVENI RRFDPATQRS SDRLDRFVMR PVADFTLDQA SISRFRTGWR DLFGPAAASD
PLYEHVSDGR RHAGLEHWLP LFHEHLETLV DYLPGVSIIL AHQVEDVLAA RLEMIADHFE
ARRQPVREGE VPYRALPPHL MYLDRKGWDG ILSGHPVMLF SPFARPDNAG GVDAGGRPGI
LFASVAGGGA RENVFAMLDT QVRQWAETGR RAYVSAWTRG SRERIATLLR EHGMRVETFD
GWARAQDLPP GTVGLLTLGL ERGFIADNLA FVSEQDLLGE RISRPPRRRK KADQFIAEAS
EIAEGDLVVH QDYGIGRYDG LETIGVGTAP HDCLRLIYDG NEKLFLPVEN IELLSRFGSD
QAGVALDKLG GASWQNRKAR MKQRIRDMAG ELIRTAALRA LREAPSMTPA EGMWDEFCAR
FPFVETEDQS RAIADVLEDM GSGRPMDRLV CGDVGFGKTE VALRAAFVAA LSGAQVAVVV
PTTLLARQHF RTFSARFSGL PITVAQLSRM VTPKEATAVR KGLADGTINI VIGTHALLAK
GVQFADLELL IIDEEQHFGV AHKEKLKALR EDVHVLTLSA TPLPRTLQLA LTGVREMSLI
ATPPTDRLAV RTFIMPFDSV VIREAIQRER FRGGQIFCVV PRIEDLDRMA ARLQDIVPDA
RLVQAHGRLT PTELERVMTE FSDGKYDILL STNIVESGLD MPAVNTLIIH RADMFGLGQL
YQLRGRVGRG KQRGYAYLTW PQTHVLSAAA EKRLEVMQTL DTLGAGFTLA SHDLDLRGAG
NLLGDEQSGH IREVGIELYQ QMLEDAVAEL RVEKGRRKAQ DRDWTPNIIL GLPVLIPETY
VPDLPVRLGL YRRIAGLAND AEIEAMEAEL VDRFGTMPDE VRNLLDVVAI KRLCREAGVE
RLEAGPKGMV IQFRGNSFAN PGGLVTWIAA HKEGNVRLRP DHKLALVREM TNAQRIRLAK
DTVQTLGRLA GQEKAA