Gene Gdia_0094 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagGdia_0094 
Symbol 
ID6973484 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGluconacetobacter diazotrophicus PAl 5 
KingdomBacteria 
Replicon accessionNC_011365 
Strand
Start bp106851 
End bp108659 
Gene Length1809 bp 
Protein Length602 aa 
Translation table11 
GC content66% 
IMG OID643389626 
Productdiguanylate cyclase with PAS/PAC sensor 
Protein accessionYP_002274509 
Protein GI209542280 
COG category[T] Signal transduction mechanisms 
COG ID[COG2199] FOG: GGDEF domain 
TIGRFAM ID[TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value0.666294 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones39 
Fosmid unclonability p-value0.206481 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACGGGCG TCTTTTTTAT CAGGAACACA CTATCGACCC TGCTGTTCTG CGTCATCTGG 
AGTATCTGCG CGCTCGCCAG CGTCACCTGG ACCCGTCACG GCGGAAGCGT CTCGATGATC
TGGCCGGCCA ATGCGATCCT GGTCATGGCC ATCCTGCGCA TGCCCGCCTT CGACCACCGG
ATCTATCCCC CGCTGCTGTT TGTGCTGTCC AGCCTGGTCA ATCTGCTGGA TGGCCGGGGA
TGGACCACCA GCGTCGGTTT CAGCGTGGCG AACACGGTCG AGGTCATGAT GGCGGCCGTC
CTGGTCCACC GGATCAGTCC GGTGTCGGGC TTCTTCGAAC AGGTCGACTG GGCGTTCCGG
TTTGCGATCG CGATCTTCGT GTCCGTCGCA TGCTCGTCGG TCATTGCCGG AGGGGCGCTG
TTCCTTGGCG AAGGGCGCGA CTGGCTGGGG GGAAGCGCCA TCTGGATGAT GGCGCACCTG
CCCGGCCTGC TGATCACGGT TCCCATGCTG CTGGCCCTCA TGCCCGACGG CGAAGGGCGT
GAAATCCGGC GCAACGCCCC CCGGCGATTG ACGGTACTGG GCCTGATGGT CCTGGTGGCC
TGCATGTCGG TGGTCGTATT CGGGCAGTCG CGCTTTCCGC TGCAGTTCCT GCTGCTGCCG
CCCCTGTTGC TGGCGACCTT CCATCTCTAC GCCAAGGGGG CCGCGATGTC GGTCGCCATC
ATTACCATGA TCGGCAGTTT CTTCATGTTT ACCGGCGCGG GGGCCGTTAC CATGCTCCAC
GGGCCGGCCG CACTGAAGGT CTATGTCTTC CAGCTCGACC TGGCGACGAT CTTCTTCTGT
GCGTTGCCCC TGGGCGCCGT GCTGACCCAG CGCGACCAGA AGGCATCGCT GGCCCAGCAG
CGGCTGCAGG ATTTCCATCA TCTGGCCGAC CGGGTCGGCG ACGTACTGTT CCGCGTCGAC
GACGCGGGAT GCTGGAGCTA TCTCAACCCG GCCTATGAAC AGATGTCCGG CATTTCGGTG
GACAAGCGGC TGGGTCAGCC CATGCTGGAC GCCGTCGTGA TCGAGGACCG CGCCGCCCTG
GCCCAGGCGC AGGCCGAATT GCAGTCCGGC AGCCGCGACG ACCTGCGCCA GGTCGTCAGC
ATCTATCGCC GCGACGGAAC CGTCCGGCAT GTCGAAATCC TGGCCCACCG GCTGGGCGAG
GGCGAAGGGT TTGGCGGCCT GATCCGCGAC GTGACGGACC AGTTGACGCT GGACGCGCAC
AATCGCCAGA TCGCCGCCGC CTATGAACAG GCCGCCAACA CCGACGAACT GACCGGCCTG
CCCAATCGAC GCGCCTTCTT TCAGGTGCTG GACGGGCAGA TGGCTGCGGC ATCCTCGGTG
GTCGCGGCGG CGATGCTGGA CCTGGACCAT TTCAAGTCGA TCAACGACAA GTACGGCCAC
CCCATCGGAG ACATCGTCCT GCGCCGCGTC GCCACGGTGG TGCGTGCGAC CCTGCGGGAC
ACCGACATGG TCGCACGGAT CGGCGGCGAG GAATTCGCGG TCCTGATCAC GAGCGAAAGC
CGCGACCGGG CGATCAGCCT GATCCGCCGG GTGGTGCGCG CGGTATCGGC GGAATCGATC
GACCTGCCGA CCGGGGTGCG GTTGCAGGTC ACGATCAGCG CGGGCATTGC CTGCCGCGAG
GCGGGGGAAG ACCGCAACGC CCTGATGTCC CGCGCCGACC AGGCCCTGTA TGTCGCCAAA
CGGACCGGCC GCAACCGGCT GACCATCGCC GATGCATCCA CGGCGGCAAC ACAGGCCGCG
ACCCCGTAA
 
Protein sequence
MTGVFFIRNT LSTLLFCVIW SICALASVTW TRHGGSVSMI WPANAILVMA ILRMPAFDHR 
IYPPLLFVLS SLVNLLDGRG WTTSVGFSVA NTVEVMMAAV LVHRISPVSG FFEQVDWAFR
FAIAIFVSVA CSSVIAGGAL FLGEGRDWLG GSAIWMMAHL PGLLITVPML LALMPDGEGR
EIRRNAPRRL TVLGLMVLVA CMSVVVFGQS RFPLQFLLLP PLLLATFHLY AKGAAMSVAI
ITMIGSFFMF TGAGAVTMLH GPAALKVYVF QLDLATIFFC ALPLGAVLTQ RDQKASLAQQ
RLQDFHHLAD RVGDVLFRVD DAGCWSYLNP AYEQMSGISV DKRLGQPMLD AVVIEDRAAL
AQAQAELQSG SRDDLRQVVS IYRRDGTVRH VEILAHRLGE GEGFGGLIRD VTDQLTLDAH
NRQIAAAYEQ AANTDELTGL PNRRAFFQVL DGQMAAASSV VAAAMLDLDH FKSINDKYGH
PIGDIVLRRV ATVVRATLRD TDMVARIGGE EFAVLITSES RDRAISLIRR VVRAVSAESI
DLPTGVRLQV TISAGIACRE AGEDRNALMS RADQALYVAK RTGRNRLTIA DASTAATQAA
TP