| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | ECH74115_5823 |
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| Symbol | fimD1 |
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| ID | 6970739 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli O157:H7 str. EC4115 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011353 |
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| Strand | + |
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| Start bp | 5473635 |
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| End bp | 5476271 |
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| Gene Length | 2637 bp |
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| Protein Length | 878 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 643389450 |
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| Product | outer membrane usher protein fimD |
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| Protein accession | YP_002273842 |
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| Protein GI | 209397655 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3188] P pilus assembly protein, porin PapC |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.50645 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 51 |
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| Fosmid unclonability p-value | 0.941906 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCATATC TGAATTTAAG ACTTTACCAG CGAAACACAC AATGCTTGCA TATTCGTAAG
CATCGTTTGG CTGGTTTTTT TGTCCGGCTC TTTGTCGCCT GTGCTTTTGC CGTACAGGCA
CCTTTGTCAT CTGCCGAACT CTATTTTAAT CCGCGCTTTT TAGCGGATGA TCCCCAGGCT
GTGGCCGATT TATCGCGTTT TGAAAATGGG CAAGAATTAC CGCCAGGGAC GTATCGCGTC
GATATCTATT TGAATAATGG TTATATGGCA ACGCGTGATG TCACATTTAA TACGGGCGAC
AGTGAACAAG GGATTGTTCC CTGCCTGACA CGCGCGCAAC TCGCCAGTAT GGGGCTGAAT
ACGGCTTCTG TCGCCGGTAT GAATCTGCTG GCGGATGATG CCTGTGTGCC ATTAACCACA
ATGGTCCAGG ACGCTACTGC GCATTTAGAT GTTGGTCAGC AGCGACTGAA CCTGACGATC
CCTCAGGCAT TTATGAGTAA TCGCGCGCGT GGTTATATTC CTCCTGAGTT ATGGGATCCC
GGTATTAATG CCGGATTGCT CAATTATAAT TTCAGCGGAA ATAGTGTACA GAATCGGATT
GGGGGTAACA GCCATTATGC ATATTTAAAC CTACAGAGTG GGTTAAATAT TGGTGCGTGG
CGTTTACGCG ACAATACCAC CTGGAGTTAT AACAGTAGCG ACAGATCATC AGGTAGCAAA
AATAAATGGC AGCATATCAA TACCTGGCTT GAGCGAGACA TAATACCGTT ACGTTCCCGG
CTGACGCTGG GTGATGGTTA TACTCAGGGT GATATTTTCG ATGGTATTAA CTTTCGCGGC
GCACAATTGG CCTCAGATGA CAATATGTTA CCCGATAGCC AAAGAGGATT TGCCCCGGTG
ATCCACGGTA TTGCTCGTGG TACTGCACAG GTCACTATTA AACAAAATGG GTATGACATT
TATAATAGTA CGGTGCCGCC GGGGCCTTTT ACCATCAACG ATATCTATGC CGCAGGTAAT
AGTGGTGACT TGCAGGTAAC GATTAAAGAG GCTGACGGCA GCACGCAGAT TTTTACCGTA
CCCTATTCGT CAGTCCCGCT TTTGCAACGT GAAGGGCATA CTCGTTATTC CATTACGGCA
GGAGAATACC GTAGTGGAAA TGCGCAACAG GAAAAACCCC GCTTTTTCCA AAGTACATTA
CTCCACGGCC TTCCAGCTGG CTGGACAATA TATGGTGGAA CGCAACTGGC AGATCGTTAT
CGTGCTTTTA ATTTTGGTAT CGGGAAAAAT ATGGGGGCAC TGGGCGCTCT GTCTGTGGAT
ATGACTCAGG CTAATTCCAC ACTTCCCGAT GACAGTCAGC ATGACGGACA ATCGGTGCGT
TTTCTCTATA ACAAATCGCT CAATGAGTCA GGCACGAATA TTCAGTTAGT GGGTTACCGT
TATTCGACCA GCGGATATTT TAATTTCGCT GATACAACAT ACAGTCGAAT GAATGGCTAC
AACATCGAAA CACAGGACGG AGTTATTCAG GTTAAGCCGA AATTCACCGA CTATTACAAC
CTCGCTTATA ACAAACGCGG GAAATTACAA CTCACCGTTA CTCAGCAACT CGGGCGCTCA
TCAACACTGT ATTTGAGTGG TAGCCATCAA ACTTATTGGG GAACGAGTAA TGTCGATGAG
CAATTCCAGG CTGGATTAAA TACTGCGTTC GAAGATATCA ACTGGACGCT CAGCTATAGC
CTGACGAAAA ACGCCTGGCA AAAAGGACGT GATCAGATGT TAGCGCGTAA CGTCAATATT
CCTTTCAGCC ACTGGCTGCG TTCTGACAGT AAATCTCAGT GGCGACATGC CAGTGCCAGC
TACAGCATGT CACACGATCT CAACGGTCGG ATGACCAATC TGGCTGGTGT ATACGGTACG
TTGCTGGAAG ACAACAACCT CAGCTATAGC GTGCAAACCG GCTATGCCGG GGGAGGCGAT
GGTAATAGCG GAAGCACAGG CTACGCCACG CTGAATTATC GCGGTGGTTA CGGCAATGCC
AATATCGGTT ACAGCCATAG CGATGATATT AAGCAGCTCT ATTACGGAGT CAGCGGTGGG
GTACTGGCTC ATGCCAATGG CGTAACGCTG GGGCAGCCGT TAAACGATAC GGTGGTGCTT
GTTAAAGCGC CTGGCGCAAA AGATGCAAAA GTCGAAAACC AGACGGGGGT GCGTACCGAC
TGGCGCGGTT ATGCCGTGCT GCCTTATGCC ACTGAATATC GGGAAAATAG AGTGGCGCTG
GATACCAATA CCCTGGCTGA TAACGTCGAT TTAGATAACG CGGTCGCTAA CGTTGTTCCC
ACTCGTGGGG CGATCGTGCG AGCAGAGTTT AAAGCGCGCG TTGGGATAAA ACTGCTCATG
ACGCTAACCC ACAATAATAA GCCGCTGCCG TTTGGGGCGA TGGTGACATC AGAGAGTAGC
CAGAGTAGCG GCATTGTTGC GGATAATGGT CAGGTTTACC TCAGCGGAAT GCCTCTAGCG
GGAAAAGTTC AGGTGAAATG GGGAGAAGAG GAAAATGCTC ATTGTGTCGC CAATTATCAA
CTGCCACCAG AGAGTCAGCA GCAGTTATTA ACCCAGCTAT CAGCTGAATG TCGTTAA
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| Protein sequence | MSYLNLRLYQ RNTQCLHIRK HRLAGFFVRL FVACAFAVQA PLSSAELYFN PRFLADDPQA
VADLSRFENG QELPPGTYRV DIYLNNGYMA TRDVTFNTGD SEQGIVPCLT RAQLASMGLN
TASVAGMNLL ADDACVPLTT MVQDATAHLD VGQQRLNLTI PQAFMSNRAR GYIPPELWDP
GINAGLLNYN FSGNSVQNRI GGNSHYAYLN LQSGLNIGAW RLRDNTTWSY NSSDRSSGSK
NKWQHINTWL ERDIIPLRSR LTLGDGYTQG DIFDGINFRG AQLASDDNML PDSQRGFAPV
IHGIARGTAQ VTIKQNGYDI YNSTVPPGPF TINDIYAAGN SGDLQVTIKE ADGSTQIFTV
PYSSVPLLQR EGHTRYSITA GEYRSGNAQQ EKPRFFQSTL LHGLPAGWTI YGGTQLADRY
RAFNFGIGKN MGALGALSVD MTQANSTLPD DSQHDGQSVR FLYNKSLNES GTNIQLVGYR
YSTSGYFNFA DTTYSRMNGY NIETQDGVIQ VKPKFTDYYN LAYNKRGKLQ LTVTQQLGRS
STLYLSGSHQ TYWGTSNVDE QFQAGLNTAF EDINWTLSYS LTKNAWQKGR DQMLARNVNI
PFSHWLRSDS KSQWRHASAS YSMSHDLNGR MTNLAGVYGT LLEDNNLSYS VQTGYAGGGD
GNSGSTGYAT LNYRGGYGNA NIGYSHSDDI KQLYYGVSGG VLAHANGVTL GQPLNDTVVL
VKAPGAKDAK VENQTGVRTD WRGYAVLPYA TEYRENRVAL DTNTLADNVD LDNAVANVVP
TRGAIVRAEF KARVGIKLLM TLTHNNKPLP FGAMVTSESS QSSGIVADNG QVYLSGMPLA
GKVQVKWGEE ENAHCVANYQ LPPESQQQLL TQLSAECR
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