Gene ECH74115_5730 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagECH74115_5730 
SymbolcpdB 
ID6969231 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameEscherichia coli O157:H7 str. EC4115 
KingdomBacteria 
Replicon accessionNC_011353 
Strand- 
Start bp5365285 
End bp5367228 
Gene Length1944 bp 
Protein Length647 aa 
Translation table11 
GC content50% 
IMG OID643389363 
Productbifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein 
Protein accessionYP_002273756 
Protein GI209396574 
COG category[F] Nucleotide transport and metabolism 
COG ID[COG0737] 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases 
TIGRFAM ID[TIGR01390] 2',3'-cyclic-nucleotide 2'-phosphodiesterase 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.122281 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones77 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATTAAGT TTAGCGCAAC GCTCCTGGCC ACGCTGATTG CCGCCAGTGT GAATGCAGCG 
ACGGTCGATC TGCGTATCAT GGAAACCACT GATCTGCATA GCAACATGAT GGATTTCGAT 
TATTACAAAG ACACCGCCAC GGAAAAATTC GGACTGGTAC GTACGGCAAG CCTGATTAAC 
AATGCCCGCA ATGAAGTGAA AAACAGCGTA CTGGTCGATA ACGGCGATTT GATTCAGGGG 
AGTCCGCTGG CCGATTACAT GTCGGCGAAA GGATTAAAAG CAGGTGATAT TCACCCGGTC 
TATAAGGCAT TAAATACGCT GGACTATACC GTCGGAACGC TTGGCAACCA CGAGTTTAAC 
TACGGTCTGG ATTACCTGAA AAATGCGCTG GCAGGAGCGA AATTCCCTTA TGTAAATGCC 
AACGTCATTG ACGCCAGAAC CAAACAGCCA ATGTTTACAC CGTATTTAAT TAAAGACACC 
GAAGTGGTCG ATAAAGACGG AAAAAAACAG ACGCTGAAGA TTGGCTATAT TGGCGTCGTG 
CCGCCGCAAA TCATGGGCTG GGATAAAGCT AATTTATCCG GAAAAGTGAC GGTGAATGAT 
ATTACCGAAA CCGTGCGCAA ATACGAGCCT GAAATGCGCG AGAAAGGTGC CGATGTCGTT 
GTCGTTCTGG CGCATTCCGG GCTGTCTGCC GATCCGTATA AAGTAATGGC GGAAAACTCA 
GTTTATTACC TCAGTGAAAT TCCGGGCGTT AACGCCATTA TGTTTGGCCA TGCTCACGCC 
GTTTTCCCGG GTAAAGATTT TGCTGATATC GAAGGGGCTG ATATCACCAA AGGCACGCTG 
AATGGTGTTC CGGCGGTAAT GCCGGGCATG TGGGGCGATC ATCTTGGGGT GGTCGACTTA 
CAACTCAGTA ATGACAGCGG TAAATGGCAG GTGACGCAGG CGAAAGCGGA AGCACGGCCG 
ATTTACGACA TCGCCAATAA AAAATCCCTC GCGGCGGAAG ACAGCAAGCT GGTAGAAACA 
CTCAAAGCCG ATCACGATGC CACACGCCAG TTCGTCAGCA AGCCAATCGG TAAATCTGCC 
GACAATATGT ATAGCTATCT GGCGCTGGTG CAGGACGATC CGACCGTGCA AGTAGTGAAC 
AACGCGCAAA AAGCGTATGT CGAGCATTAC ATTCAGGGCG ATCCGGATCT GGCAAAACTG 
CCGGTGCTTT CAGCTGCCGC ACCGTTTAAA GTCGGTGGTC GCAAAAATGA CCCGGCAAGC 
TATGTGGAGG TGGAAAAAGG CCAGTTGACC TTCCGTAATG CCGCCGATCT TTATCTCTAT 
CCCAATACGC TGATTGTGGT GAAAGCCAGC GGTAAAGAGG TGAAAGAGTG GCTGGAGTGC 
TCCGCCGGAC AGTTTAACCA GATTGATCCC AACAGCACGA AACCACAGTC ACTCATCAAC 
TGGGATGGTT TCCGCACTTA TAACTTTGAT GTTATTGATG GTGTGAATTA TCAGATTGAT 
GTTACCCAGC CCGCCCGTTA TGACGGCGAG TGCCAGATGA TTAATGCCAA TGCGGAAAGG 
ATTAAGAACC TGACCTTTAA TGGCAAGCCG ATTGATCCGA ACGCTATGTT CCTCGTTGCC 
ACCAATAACT ATCGCGCTTA CGGCGGCAAA TTTGCCGGGA CGGGCGACAG CCATATCGCT 
TTTGCTTCAC CGGATGAGAA CCGCTCGGTG CTGGCAGCGT GGATTGCTGA TGAGTCGAAA 
CGTGCGGGGG AAATTCACCC GGCGGCAGAT AACAACTGGC GTTTAGCACC GATAGCTGCC 
GATAAGAAAC TGGATATCCG TTTCGAAACT TCCCCGTCAG ATAAAGCCGC AGCGTTTATT 
AAAGAGAAAG GGCAGTATCC GATGAATAAA GTCGCGACCG ATGATATCGG GTTTGCGATT 
TATCAGGTGG ATTTGAGTAA GTAA
 
Protein sequence
MIKFSATLLA TLIAASVNAA TVDLRIMETT DLHSNMMDFD YYKDTATEKF GLVRTASLIN 
NARNEVKNSV LVDNGDLIQG SPLADYMSAK GLKAGDIHPV YKALNTLDYT VGTLGNHEFN 
YGLDYLKNAL AGAKFPYVNA NVIDARTKQP MFTPYLIKDT EVVDKDGKKQ TLKIGYIGVV 
PPQIMGWDKA NLSGKVTVND ITETVRKYEP EMREKGADVV VVLAHSGLSA DPYKVMAENS 
VYYLSEIPGV NAIMFGHAHA VFPGKDFADI EGADITKGTL NGVPAVMPGM WGDHLGVVDL 
QLSNDSGKWQ VTQAKAEARP IYDIANKKSL AAEDSKLVET LKADHDATRQ FVSKPIGKSA 
DNMYSYLALV QDDPTVQVVN NAQKAYVEHY IQGDPDLAKL PVLSAAAPFK VGGRKNDPAS 
YVEVEKGQLT FRNAADLYLY PNTLIVVKAS GKEVKEWLEC SAGQFNQIDP NSTKPQSLIN 
WDGFRTYNFD VIDGVNYQID VTQPARYDGE CQMINANAER IKNLTFNGKP IDPNAMFLVA 
TNNYRAYGGK FAGTGDSHIA FASPDENRSV LAAWIADESK RAGEIHPAAD NNWRLAPIAA 
DKKLDIRFET SPSDKAAAFI KEKGQYPMNK VATDDIGFAI YQVDLSK