| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | ECH74115_5649 |
|---|
| Symbol | cadC |
|---|
| ID | 6968639 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli O157:H7 str. EC4115 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011353 |
|---|
| Strand | - |
|---|
| Start bp | 5290047 |
|---|
| End bp | 5291585 |
|---|
| Gene Length | 1539 bp |
|---|
| Protein Length | 512 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 643389283 |
|---|
| Product | DNA-binding transcriptional activator CadC |
|---|
| Protein accession | YP_002273680 |
|---|
| Protein GI | 209398414 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG3710] DNA-binding winged-HTH domains |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.00000157695 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 50 |
|---|
| Fosmid unclonability p-value | 0.551738 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAACAAC CTGTAGTTCG CGTTGGCGAA TGGCTTGTTA CTCCGTCCAT AAACCAAATT
AGCCGCAATG GGCGTCAACT TACCCTTGAG CCGAGATTAA TCGACCTTCT GGTTTTCTTT
GCTCAACACA GTGGCGAAGT ACTTAGCAGG GATGAACTTA TCGATAATGT CTGGAAGAGA
AGTATTGTCA CCAATCACGT TGTGACGCAG AGTATCTCAG AACTACGTAA GTCATTAAAA
GATAATGATG AAGATAGTCC TGTCTATATC GCTACTGTAC CAAAGCGCGG CTATAAATTA
ATGGTGCCGG TTATCTGGTA CAGCGAAGAA GAGGGAGAGG AAATAATGCT ATCTTCGCCT
CCCCCTATAC CAGAGGCGGT TCCTGCCACA GATTCTCCCT CCCACAGTCT TAACATTCAA
AACACCGCAA CGCCACCTGA ACAATCCCCA GTTAAAAGCA AACGATTCAC TACCTTTTGG
GTATGGTTTT TTTTCCTGTT GTCCTTAGGT ATCTGTGTAG CACTGGTAGC GTTTTCAAGT
CTTGATACAC GTCTTCCGAT GAGCAAATCG CGTATTTTGC TCAATCCACG CGATATTGAC
ATTAATATGG TAAATAAAAG TTGTAACAGC TGGAGTTCCC CGTATCAGCT CTCTTACGCG
ATAGGCGTGG GTGATTTGGT GGCGACATCA CTTAACACCT TCTCCACCTT TATGGTGCAT
GACAAAATCA ACTACAACAT TGATGAACCG AGCAGTTCCG GTAAAACATT ATCTATTGCG
TTTGTTAATC AGCGCCAATA CCGTGCTCAA CAATGCTTTA TGTCGATAAA ATTGGTAGAC
AATGCAGATG GTTCAACCAT GCTGGATAAA CGTTATGTCA TCACTAACGG TAATCAGCTG
GCGATTCAAA ATGATTTACT GGAGAGTTTA TCAAAAGCGT TAAACCAACC GTGGCCACAA
CGAATGCAGG AGACGCTCCA GCAAATTTTG CCTCATCGTG GTGCGTTATT AACTAATTTT
TATCAGGCAC ATGATTATTT ACTGCATGGC GATGATAAAT CATTGAACCG TGCCAGTGAA
TTATTAGGTG AGATTGTTCA ATCATCCCCA GAATTTACCT ACGCGAGAGC AGAAAAAGCA
TTAGTTGATA TCGTGCGCCA TTCTCAACAT CCTTTAGATG AAAAACAATT AGCAGCACTG
AACACAGAAA TAGATAACAT TGTTACACTA CCGGAATTGA ATAACCTGTC CATTATATAT
CAAATAAAAG CGGTCAGTGC TCTGGTAAAA GGTAAAACAG ATGAGTCTTA CCAGGCGATA
AATACTGGCA TTGATCTTGA AATGTCCTGG CTAAATTATG TATTGCTTGG CAAGGTTTAT
GAAATGAAGG GGATGAACCG GGAAGCGGCT GATGCATATC TCACCGCCTT TAATTTACGC
CCAGGGGCAA ACACCCTTTA CTGGATTGAA AATGGTATAT TCCAGACTTC TGTTCCTTAT
GTTGTACCTT ATCTCGACAA ATTTCTCGCT TCAGAATAA
|
|---|
| Protein sequence | MQQPVVRVGE WLVTPSINQI SRNGRQLTLE PRLIDLLVFF AQHSGEVLSR DELIDNVWKR
SIVTNHVVTQ SISELRKSLK DNDEDSPVYI ATVPKRGYKL MVPVIWYSEE EGEEIMLSSP
PPIPEAVPAT DSPSHSLNIQ NTATPPEQSP VKSKRFTTFW VWFFFLLSLG ICVALVAFSS
LDTRLPMSKS RILLNPRDID INMVNKSCNS WSSPYQLSYA IGVGDLVATS LNTFSTFMVH
DKINYNIDEP SSSGKTLSIA FVNQRQYRAQ QCFMSIKLVD NADGSTMLDK RYVITNGNQL
AIQNDLLESL SKALNQPWPQ RMQETLQQIL PHRGALLTNF YQAHDYLLHG DDKSLNRASE
LLGEIVQSSP EFTYARAEKA LVDIVRHSQH PLDEKQLAAL NTEIDNIVTL PELNNLSIIY
QIKAVSALVK GKTDESYQAI NTGIDLEMSW LNYVLLGKVY EMKGMNREAA DAYLTAFNLR
PGANTLYWIE NGIFQTSVPY VVPYLDKFLA SE
|
|---|
| |