| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | ECH74115_5648 |
|---|
| Symbol | cadB |
|---|
| ID | 6970261 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli O157:H7 str. EC4115 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011353 |
|---|
| Strand | - |
|---|
| Start bp | 5288347 |
|---|
| End bp | 5289681 |
|---|
| Gene Length | 1335 bp |
|---|
| Protein Length | 444 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 643389282 |
|---|
| Product | lysine/cadaverine antiporter |
|---|
| Protein accession | YP_002273679 |
|---|
| Protein GI | 209397656 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0531] Amino acid transporters |
|---|
| TIGRFAM ID | [TIGR00905] transporter, basic amino acid/polyamine antiporter (APA) family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.742778 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 52 |
|---|
| Fosmid unclonability p-value | 0.745814 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTTCTG CCAAGAAGAT CGGGCTATTT GCCTGTACCG GTGTTGTTGC CGGTAATATG
ATGGGGAGCG GTATTGCATT ATTACCTGCG AACCTAGCAA GTATCGGTGG TATTGCTATC
TGGGGTTGGA TTATCTCTAT TATTGGTGCA ATGTCGCTGG CGTATGTATA TGCCCGACTG
GCAACAAAAA ACCCGCAACA AGGTGGCCCA ATTGCTTATG CCGGAGAAAT TTCTCCTGCA
TTTGGTTTTC AGACAGGTGT TCTTTATTAC CATGCTAACT GGATTGGTAA CCTGGCGATT
GGTATTACCG CTGTATCTTA TCTTTCCACC TTCTTCCCAG TATTAAATGA TCCTGTTCCG
GCGGGTATCG CCTGTATTGC TATCGTCTGG GTATTTACCT TTGTAAATAT GCTCGGCGGT
ACCTGGGTAA GCCGTTTAAC CACTATTGGT CTGGTGCTGG TTCTTATTCC TGTGGTGATG
ACTGCTATTG TTGGCTGGCA TTGGTTTGAT GCGGCAACTT ATGCAGCTAA CTGGAATACT
GCGGATACCA CTGATGGTCA TGCGATCATT AAAAGTATTC TGCTCTGCCT GTGGGCCTTC
GTGGGTGTTG AATCCGCAGC TGTAAGTACT GGTATGGTTA AAAACCCGAA ACGTACCGTT
CCGCTGGCAA CCATGCTGGG TACTGGTTTA GCAGGTATTG TTTACATCGC TGCGACTCAG
GTGCTTTCCG GTATGTATCC GTCTTCTGTA ATGGCGGCTT CCGGTGCTCC GTTTGCAATC
AGTGCTTCAA CTATCCTCGG TAACTGGGCT GCGCCGCTGG TTTCTGCATT CACCGCCTTT
GCGTGCCTGA CTTCTCTGGG CTCCTGGATG ATGTTGGTAG GCCAGGCAGG TGTACGTGCC
GCTAACGACG GTAACTTCCC GAAAGTTTAT GGTGAAGTCG ACAGCAACGG TATTCCGAAA
AAAGGTCTGC TGCTGGCTGC AGTGAAAATG ACTGCCCTGA TGATCCTCAT CACTCTGATG
AACTCTGCCG GTGGTAAAGC ATCTGACCTG TTCGGTGAAC TGACCGGTAT CGCAGTACTG
CTGACTATGC TGCCGTACTT CTACTCTTGC GTTGACCTGA TTCGTTTTGA AGGCGTTAAC
ATCCGCAACT TTGTCAGCCT GATCTGCTCT GTACTGGGTT GCGTGTTCTG CTTCATCGCG
CTGATGGGCG CAAGCTCCTT CGAGCTGGCA GGTACCTTCA TCGTCAGCCT GATTATCCTG
ATGTTCTACG CTCGCAAAAT GCACGAGCGC CAGAGCCACT CAATGGATAA CCACACCGCG
TCTAACGCAC ATTAA
|
|---|
| Protein sequence | MSSAKKIGLF ACTGVVAGNM MGSGIALLPA NLASIGGIAI WGWIISIIGA MSLAYVYARL
ATKNPQQGGP IAYAGEISPA FGFQTGVLYY HANWIGNLAI GITAVSYLST FFPVLNDPVP
AGIACIAIVW VFTFVNMLGG TWVSRLTTIG LVLVLIPVVM TAIVGWHWFD AATYAANWNT
ADTTDGHAII KSILLCLWAF VGVESAAVST GMVKNPKRTV PLATMLGTGL AGIVYIAATQ
VLSGMYPSSV MAASGAPFAI SASTILGNWA APLVSAFTAF ACLTSLGSWM MLVGQAGVRA
ANDGNFPKVY GEVDSNGIPK KGLLLAAVKM TALMILITLM NSAGGKASDL FGELTGIAVL
LTMLPYFYSC VDLIRFEGVN IRNFVSLICS VLGCVFCFIA LMGASSFELA GTFIVSLIIL
MFYARKMHER QSHSMDNHTA SNAH
|
|---|
| |