Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | ECH74115_5358 |
Symbol | rhaS |
ID | 6968119 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Escherichia coli O157:H7 str. EC4115 |
Kingdom | Bacteria |
Replicon accession | NC_011353 |
Strand | + |
Start bp | 5000809 |
End bp | 5001645 |
Gene Length | 837 bp |
Protein Length | 278 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 643389014 |
Product | transcriptional activator RhaS |
Protein accession | YP_002273423 |
Protein GI | 209397755 |
COG category | [K] Transcription |
COG ID | [COG4977] Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 67 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACCGTAT TACATAGTGT GGATTTTTTT CCGTCTGGTA ACGCGTCCGT GGCGATAGAA CCCCGGCTCC CGCAGGCGGA TTTTCCTGAA CATCATCATG ATTTTCATGA AATTGTGATT GTCGAACATG GCACGGGTAT TCATGTGTTT AATGGGCAGC CCTATACCAT CACCGGTGGC ACGGTCTGTT TTGTGCGCGA CCATGATCGG CATCTGTATG AACATACCGA TAATCTGTGT CTGACTAATG TGCTGTATCG CTCGCCGGAT CGATTTCAGT TTCTCGCCGG ACTGAATCAG TTGCTGCCAC AAGAGCTGGA TGGGCAGTAT CCGTCTCACT GGCGCGTTAA CCACAGCGTA TTGCAGCAGG TGCGACAGCT GGTTGCACAG ATGGAACAGC AGGAAGGGGA AAATGATTTA CCCTCGACCG CCAGTCGCGA GATCTTGTTT ATGCAATTAC TGCTCTTGCT GCGTAAAAGC AGTTTGCAGG AGAACCTGGA AAACAGCGCA TCACGTCTCA ACTTGCTTCT GGCCTGGCTG GAGGACCATT TTGCCGATGA GGTGAATTGG GATGCCGTGG CGGATCAATT TTCTCTTTCA CTGCGTACGC TACATCGGCA GCTTAAGCAG CAAACGGGAC TGACGCCTCA GCGATACCTG AATCGCCTGC GACTGATGAA AGCCCGACAT CTGCTACGTC ACAGCGAGGC CAGCGTTACT GACATCGCCT ATCATTGCGG ATTCAGCGAC AGTAACCACT TTTCGACGCT TTTTCGCCGA GAGTTTAACT GGTCACCGCG TGATATTCGT CAGGGACGGG ATGGCTTTCT GCAATAA
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Protein sequence | MTVLHSVDFF PSGNASVAIE PRLPQADFPE HHHDFHEIVI VEHGTGIHVF NGQPYTITGG TVCFVRDHDR HLYEHTDNLC LTNVLYRSPD RFQFLAGLNQ LLPQELDGQY PSHWRVNHSV LQQVRQLVAQ MEQQEGENDL PSTASREILF MQLLLLLRKS SLQENLENSA SRLNLLLAWL EDHFADEVNW DAVADQFSLS LRTLHRQLKQ QTGLTPQRYL NRLRLMKARH LLRHSEASVT DIAYHCGFSD SNHFSTLFRR EFNWSPRDIR QGRDGFLQ
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