| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | ECH74115_5282 |
|---|
| Symbol | ubiD |
|---|
| ID | 6967477 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli O157:H7 str. EC4115 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011353 |
|---|
| Strand | + |
|---|
| Start bp | 4924412 |
|---|
| End bp | 4925905 |
|---|
| Gene Length | 1494 bp |
|---|
| Protein Length | 497 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 643388946 |
|---|
| Product | 3-octaprenyl-4-hydroxybenzoate decarboxylase |
|---|
| Protein accession | YP_002273360 |
|---|
| Protein GI | 209397095 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0043] 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases |
|---|
| TIGRFAM ID | [TIGR00148] UbiD family decarboxylases |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 42 |
|---|
| Fosmid unclonability p-value | 0.064348 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACGCCA TGAAATATAA CGATTTACGC GACTTCTTGA CGTTGCTTGA ACAGCAGGGT
GAGCTAAAAC GTATCACGCT CCCGGTGGAC CCGCATCTGG AAATCACTGA AATTGCTGAC
CGCACGCTGC GTGCTGGTGG GCCTGCGCTG TTGTTTGAAA ACCCTAAAGG GTACTCAATG
CCGGTGCTGT GCAACTTGTT CGGTACGCCA AAGCGCGTAG CGATGGGTAT GGGCCAGGAA
GATGTTTCAG CACTGCGTGA AGTCGGTAAA TTATTAGCAT TTCTGAAAGA ACCAGAGCCG
CCAAAAGGTT TTCGCGATCT GTTTGATAAG CTGCCGCAGT TTAAGCAGGT GTTAAACATG
CCGACAAAGC GACTGCGCGG TGCACCCTGC CAACAAAAAA TCGTCTCTGG CGATGACGTC
GATCTCAACC GTATTCCCAT TATGACCTGT TGGCCGGAAG ATGCCGCGCC GCTGATTACA
TGGGGGCTAA CCGTTACACG TGGCCCTCAT AAAGAGCGAC AGAATCTGGG CATTTATCGC
CAGCAACTGA TTGGTAAAAA CAAGCTGATT ATGCGTTGGC TGTCGCATCG CGGCGGCGCG
CTGGATTATC AGGAGTGGTG TGCGGCGCAT CCAGGTGAAC GTTTCCCGAT CTCTGTGGCG
TTGGGCGCTG ATCCGGCAAC CATTCTCGGT GCAGTCACAC CAGTACCAGA TACTTTGTCG
GAATACGCCT TTGCCGGATT GCTACGTGGC ACCAAAACCG AAGTAGTGAA GTGTATTTCC
AATGATCTCG AAGTGCCCGC CAGTGCGGAG ATTGTGCTGG AAGGGTATAT CGAACAAGGC
GAAATGGCGC CAGAAGGACC GTATGGTGAC CACACTGGTT ACTATAACGA AGTCGATAGT
TTCCCGGTAT TTACCGTGAC GCATATTACC CAGCGTGAAG ATGCGATTTA CCATTCCACC
TATACCGGGC GTCCGCCAGA TGAACCCGCG GTACTGGGAG TGGCGTTGAA CGAAGTATTT
GTTCCCATTC TGCAAAAGCA GTTCCCGGAA ATTGTCGATT TTTACCTGCC GCCGGAAGGC
TGCTCTTATC GCCTGGCGGT AGTGACAATC AAAAAACAGT ACGCCGGACA CGCGAAGCGC
GTCATGATGG GCGTCTGGTC GTTCTTACGC CAGTTTATGT ACACTAAATT TGTGATCGTT
TGCGATGATG ACGTTAACGC ACGCGACTGG AACGATGTGA TTTGGGCGAT TACCACCCGT
ATGGACCCAG CGCGGGATAC TGTTCTGGTA GAAAATACGC CTATTGATTA TCTGGATTTT
GCCTCGCCTG TCTCCGGGCT GGGTTCAAAA ATGGGGCTGG ATGCCACGAA TAAATGGCCG
GGGGAAACCC AGCGTGAATG GGGACGTCCC ATCAAAAAAG ATCCAGATGT TGTCGCACAT
ATTGACGCCA TCTGGGATGA ACTGGCTATT TTTAACAACG GTAAAAGCGC CTGA
|
|---|
| Protein sequence | MDAMKYNDLR DFLTLLEQQG ELKRITLPVD PHLEITEIAD RTLRAGGPAL LFENPKGYSM
PVLCNLFGTP KRVAMGMGQE DVSALREVGK LLAFLKEPEP PKGFRDLFDK LPQFKQVLNM
PTKRLRGAPC QQKIVSGDDV DLNRIPIMTC WPEDAAPLIT WGLTVTRGPH KERQNLGIYR
QQLIGKNKLI MRWLSHRGGA LDYQEWCAAH PGERFPISVA LGADPATILG AVTPVPDTLS
EYAFAGLLRG TKTEVVKCIS NDLEVPASAE IVLEGYIEQG EMAPEGPYGD HTGYYNEVDS
FPVFTVTHIT QREDAIYHST YTGRPPDEPA VLGVALNEVF VPILQKQFPE IVDFYLPPEG
CSYRLAVVTI KKQYAGHAKR VMMGVWSFLR QFMYTKFVIV CDDDVNARDW NDVIWAITTR
MDPARDTVLV ENTPIDYLDF ASPVSGLGSK MGLDATNKWP GETQREWGRP IKKDPDVVAH
IDAIWDELAI FNNGKSA
|
|---|
| |