Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | ECH74115_5260 |
Symbol | rarD |
ID | 6967373 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Escherichia coli O157:H7 str. EC4115 |
Kingdom | Bacteria |
Replicon accession | NC_011353 |
Strand | - |
Start bp | 4902716 |
End bp | 4903603 |
Gene Length | 888 bp |
Protein Length | 295 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 643388924 |
Product | RarD protein |
Protein accession | YP_002273338 |
Protein GI | 209397955 |
COG category | [R] General function prediction only |
COG ID | [COG2962] Predicted permeases |
TIGRFAM ID | [TIGR00688] rarD protein |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 0.946168 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 53 |
Fosmid unclonability p-value | 0.789863 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGATGCAA AACAAACGCG GCAGGGCGTA TTACTCGCTC TTGCCGCTTA TTTTATTTGG GGTATAGCCC CAGCGTACTT CAAGTTGATT TACTACGTGC CCACCGATGA GATCCTGACG CATCGCGTGA TCTGGTCGTT TTTCTTTATG GTGGTGCTGA TGAGCATTTG CCGCCAGTGG TCCTATTTAA AAACGCTGAT TCAGACGCCA CAGAAAATTT TTATGCTGGC AGTCTCTGCC GTGCTGATTG GTGGCAACTG GCTACTGTTT ATCTGGGCGG TGAACAATCA CCATATGCTG GAAGCGAGCC TTGGTTACTT TATTAACCCG CTGGTGAACA TTGTGCTGGG GATGATTTTC CTCGGCGAGC GATTCCGCCG GATGCAATGG CTGGCGGTGA TTCTGGCGAT ATGTGGCGTG TTAGTCCAGC TGTGGACTTT TGGTTCGCTA CCTATTATCG CGCTGGGGCT GGCATTTAGT TTTGCCTTCT ACGGCCTGGT GCGCAAGAAG ATTGCGGTAG AAGCACAAAC CGGCATGTTA ATTGAAACCA TGTGGCTGCT GCCCGTGGCG GCGATTTACC TGTTTGCTAT TGCCGACAGC TCAACCAGCC ATATGGGGCA AAACCCGATG TCGCTGAATT TACTGCTGAT CGCCGCCGGT ATTGTCACTA CCGTACCGCT GTTGTGTTTT ACCGCCGCTG CCACGCGCCT TCGTCTCTCA ACGTTAGGCT TTTTCCAGTA CATTGGCCCG ACGCTGATGT TCCTGCTGGC TGTGACGTTT TATGGTGAAA AACCGGGTGC CGATAAGATG GTGACTTTCA CCTTTATTTG GGTGGCGCTG GCAATTTTTG TGATGGATGC GATTTATACG CAGCGTAGAA AAAGTTAA
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Protein sequence | MDAKQTRQGV LLALAAYFIW GIAPAYFKLI YYVPTDEILT HRVIWSFFFM VVLMSICRQW SYLKTLIQTP QKIFMLAVSA VLIGGNWLLF IWAVNNHHML EASLGYFINP LVNIVLGMIF LGERFRRMQW LAVILAICGV LVQLWTFGSL PIIALGLAFS FAFYGLVRKK IAVEAQTGML IETMWLLPVA AIYLFAIADS STSHMGQNPM SLNLLLIAAG IVTTVPLLCF TAAATRLRLS TLGFFQYIGP TLMFLLAVTF YGEKPGADKM VTFTFIWVAL AIFVMDAIYT QRRKS
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