| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | ECH74115_5136 |
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| Symbol | trmE |
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| ID | 6971346 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli O157:H7 str. EC4115 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011353 |
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| Strand | + |
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| Start bp | 4776165 |
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| End bp | 4777529 |
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| Gene Length | 1365 bp |
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| Protein Length | 454 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 643388808 |
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| Product | tRNA modification GTPase TrmE |
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| Protein accession | YP_002273234 |
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| Protein GI | 209395938 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0486] Predicted GTPase |
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| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR00450] tRNA modification GTPase TrmE |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.041745 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 41 |
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| Fosmid unclonability p-value | 0.0619684 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAGCGATA ATGACACTAT CGTAGCCCAG GCCACGCCTC CGGGACGTGG CGGCGTTGGC
ATCCTGCGCA TCTCCGGCTT CAAAGCCCGT GAAGTTGCCG AAACCGTGCT GGGTAAACTG
CCTAAGCCGC GCTACGCCGA TTATCTTCCG TTTAAAGACG CCGATGGCAG CGTGCTCGAT
CAGGGGATTG CGCTATGGTT CCCTGGCCCG AACTCGTTCA CCGGCGAAGA TGTGCTGGAA
CTGCAGGGTC ATGGCGGTCC GGTGATTCTC GACCTGCTGT TAAAACGCAT TCTGACCATT
CCCGGCCTGC GGATTGCTCG CCCTGGTGAG TTTTCCGAAC GCGCGTTTCT TAACGATAAA
CTCGACTTAG CCCAGGCCGA GGCGATTGCC GATCTTATCG ATGCCAGTTC GGAACAGGCA
GCCCGTTCGG CACTTAACTC GCTGCAAGGC GCATTCTCCG CACGGGTCAA CCATCTGGTG
GAAGCCCTCA CCCACTTGCG CATTTACGTC GAAGCGGCAA TTGATTTCCC CGATGAAGAG
ATCGATTTCC TCTCCGACGG AAAAATTGAA GCCCAGCTTA ATGACGTGAT TGCCGATCTC
GATGCAGTGC GTGCTGAAGC ACGTCAGGGT AGTTTGTTGC GCGAAGGGAT GAAGGTGGTG
ATTGCCGGAC GTCCTAATGC CGGTAAATCG AGCCTGTTAA ACGCGCTGGC TGGCCGTGAA
GCAGCAATCG TAACCGATAT CGCCGGAACC ACGCGTGACG TGTTGCGTGA GCATATCCAC
ATTGACGGAA TGCCGCTGCA TATCATCGAC ACCGCCGGGC TACGTGAAGC CAGCGATGAA
GTGGAACGTA TTGGTATCGA GCGCGCGTGG CAAGAAATTG AACAAGCCGA CCGCGTGCTG
TTTATGGTCG ATGGCACCAC GACAGACGCC GTTGATCCGG CGGAGATCTG GCCGGAATTT
ATCGCCCGTC TGCCCGCGAA ACTGCCGATC ACCGTGGTAC GCAATAAAGC CGATATCACT
GGCGAAACGC TGGGAATGAG TGAAGTGAAC GGTCATGCGT TGATTCGTCT CTCGGCAAAG
ACTGGCGAAG GCGTGGACGT GCTGCGTAAC CATCTCAAAC AGAGCATGGG CTTTGACACC
AACATGGAAG GCGGCTTCCT GGCGCGTCGT CGCCACCTTC AGGCGCTGGA ACAGGCAGCG
GAGCATTTGC AGCAAGGTAA AGCGCAACTG TTGGGTGCCT GGGCGGGCGA ACTGCTGGCG
GAAGAGTTGC GCCTGGCACA GCAGAACTTA AGCGAAATCA CCGGGGAATT TACCTCTGAT
GATTTGCTGG GGCGGATTTT CTCCAGCTTC TGTATTGGTA AGTAA
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| Protein sequence | MSDNDTIVAQ ATPPGRGGVG ILRISGFKAR EVAETVLGKL PKPRYADYLP FKDADGSVLD
QGIALWFPGP NSFTGEDVLE LQGHGGPVIL DLLLKRILTI PGLRIARPGE FSERAFLNDK
LDLAQAEAIA DLIDASSEQA ARSALNSLQG AFSARVNHLV EALTHLRIYV EAAIDFPDEE
IDFLSDGKIE AQLNDVIADL DAVRAEARQG SLLREGMKVV IAGRPNAGKS SLLNALAGRE
AAIVTDIAGT TRDVLREHIH IDGMPLHIID TAGLREASDE VERIGIERAW QEIEQADRVL
FMVDGTTTDA VDPAEIWPEF IARLPAKLPI TVVRNKADIT GETLGMSEVN GHALIRLSAK
TGEGVDVLRN HLKQSMGFDT NMEGGFLARR RHLQALEQAA EHLQQGKAQL LGAWAGELLA
EELRLAQQNL SEITGEFTSD DLLGRIFSSF CIGK
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