| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | ECH74115_5075 |
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| Symbol | epaP |
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| ID | 6971938 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli O157:H7 str. EC4115 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011353 |
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| Strand | - |
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| Start bp | 4720436 |
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| End bp | 4721089 |
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| Gene Length | 654 bp |
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| Protein Length | 217 aa |
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| Translation table | 11 |
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| GC content | 33% |
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| IMG OID | 643388753 |
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| Product | type III secretion system protein |
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| Protein accession | YP_002273179 |
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| Protein GI | 209398112 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4790] Type III secretory pathway, component EscR |
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| TIGRFAM ID | [TIGR01102] type III secretion apparatus protein, YscR/HrcR family |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 38 |
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| Fosmid unclonability p-value | 0.016098 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGTCTCAAT TAATGACCAT TGGCTCACAG CCAATATTTT TAATTATTGT ATTTTTTCTG
TTATCATTAC TGCCAATATT TGTTGTTATT GGTACTTCAT TCCTGAAAAT TTCTATTGTA
CTGGGGATAT TGAAGAACGC ATTAGGCATT CAACAGGTAC CACCAAACAT GGCGCTAACA
TCAGTGTCTT TGATACTGAC AATGTTTATT ATGTCTCCGA TAATATTACA GATAAATGAT
AATATTTCTC AGGAACCAAT CAATTATACC GACTCTGATT TTTTTCAAAA AGTTGATGAG
AAAATATTAT CACCATATCG CGGTTTTTTA GAAAAAAATA CAGAGAAAGA CAATGTAGAG
TTTTTTGAAC GTGCAGCTCA AAAAAAATTG GGTAATGAAA CTATCTTAAA AAAAGACTCT
CTATTTATAC TGTTACCGGC TTTCACGATG GGGCAGCTTG AAGCTGCATT CAAGATAGGT
TTTTTGCTCT ATTTACCCTT TATTGCGATA GATTTGATCA TTTCCAATAT CTTATTGGCC
TTGGGTATGA TGATGGTATC GCCAGTAACA ATTTCGATTC CTTTTAAGAT CTTATTATTC
ATTCTTGTTG GAGGCTGGCA AAAATTATTC GAATTTCTGT TGGTGGTGAA TTGA
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| Protein sequence | MSQLMTIGSQ PIFLIIVFFL LSLLPIFVVI GTSFLKISIV LGILKNALGI QQVPPNMALT
SVSLILTMFI MSPIILQIND NISQEPINYT DSDFFQKVDE KILSPYRGFL EKNTEKDNVE
FFERAAQKKL GNETILKKDS LFILLPAFTM GQLEAAFKIG FLLYLPFIAI DLIISNILLA
LGMMMVSPVT ISIPFKILLF ILVGGWQKLF EFLLVVN
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