| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | ECH74115_4942 |
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| Symbol | xylF |
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| ID | 6971899 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli O157:H7 str. EC4115 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011353 |
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| Strand | + |
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| Start bp | 4580406 |
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| End bp | 4581398 |
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| Gene Length | 993 bp |
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| Protein Length | 330 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 643388625 |
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| Product | D-xylose transporter subunit XylF |
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| Protein accession | YP_002273052 |
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| Protein GI | 209400101 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG4213] ABC-type xylose transport system, periplasmic component |
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| TIGRFAM ID | [TIGR02634] D-xylose ABC transporter, substrate-binding protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 39 |
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| Fosmid unclonability p-value | 0.0258127 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAATAA AGAACATTCT ACTCACCCTT TGCACCTCAC TCCTGCTTAC CAACGTTGCT
GCACACGCCA AAGAAGTCAA AATAGGTATG GCGATTGATG ATCTCCGTCT TGAACGCTGG
CAAAAAGATC GAGATATCTT TGTGAAAAAG GCAGAATCTC TCGGCGCGAA AGTATTTGTA
CAGTCTGCAA ATGGCAATGA AGAAACACAA ATGTCGCAGA TTGAAAACAT GATAAACCGG
GGTGTCGATG TTCTTGTCAT TATTCCGTAT AACGGTCAGG TATTAAGTAA CGTTGTAAAA
GAAGCCAAAC AAGAAGGCAT TAAAGTATTA GCTTACGACC GTATGATTAA CGATGCGGAT
ATCGATTTTT ATATTTCTTT CGATAACGAA AAAGTCGGTG AACTGCAGGC AAAAGCCCTG
GTCGATATTG TTCCGCAAGG TAATTACTTC CTGATGGGCG GCTCGCCGGT AGATAACAAC
GCTAAGCTGT TCCGCGCCGG ACAAATGAAA GTGTTACAAC CTTACGTTGA TTCCGGAAAA
ATTAAAGTCG TTGGTGACCA ATGGGTTGAT GGCTGGTTAC CGGAAAACGC ATTGAAAATT
ATGGAAAACG CGCTAACCGC CAATAATAAC AAAATTGATG CTGTAGTTGC CTCAAACGAT
GCCACCGCAG GTGGGGCAAT TCAGGCATTA AGCGCGCAAG GTTTATCAGG GAAAGTAGCA
ATTTCTGGCC AGGATGCGGA TCTCGCAGGT ATTAAACGTA TTGCTGCCGG TACGCAAACT
ATGACGGTAT ATAAACCTAT TACATTGCTG GCAAATACTG CCGCAGAAAT TGCCGTTGAA
TTGGGCAATG GTCAGGAGCC AAAAGCAGAT ACTTCACTAA ATAATGGCCT GAAAGATGTC
CCCTCCCGCC TCCTGACACC GATCGATGTG AATAAAAACA ACATCAAAGA TACGGTAATT
AAAGACGGAT TCCACAAAGA GAGCGAGCTG TAA
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| Protein sequence | MKIKNILLTL CTSLLLTNVA AHAKEVKIGM AIDDLRLERW QKDRDIFVKK AESLGAKVFV
QSANGNEETQ MSQIENMINR GVDVLVIIPY NGQVLSNVVK EAKQEGIKVL AYDRMINDAD
IDFYISFDNE KVGELQAKAL VDIVPQGNYF LMGGSPVDNN AKLFRAGQMK VLQPYVDSGK
IKVVGDQWVD GWLPENALKI MENALTANNN KIDAVVASND ATAGGAIQAL SAQGLSGKVA
ISGQDADLAG IKRIAAGTQT MTVYKPITLL ANTAAEIAVE LGNGQEPKAD TSLNNGLKDV
PSRLLTPIDV NKNNIKDTVI KDGFHKESEL
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