| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | ECH74115_4731 |
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| Symbol | rtcR |
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| ID | 6968754 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli O157:H7 str. EC4115 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011353 |
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| Strand | + |
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| Start bp | 4374295 |
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| End bp | 4375893 |
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| Gene Length | 1599 bp |
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| Protein Length | 532 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 643388431 |
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| Product | sigma-54 dependent transcriptional regulator RtcR |
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| Protein accession | YP_002272859 |
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| Protein GI | 209399613 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG4650] Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 66 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGTAAAA CAGTGGCTTT TGGCTTTGTC GGAACAGTGC TGGATTATGC CGGGCGCGGC
AGTCAGCGCT GGTCGAAATG GCGTCCGTCA CTCTGTATAT GCCAGCAAGA ATCGTTAGTC
ATCGATCGAC TGGAATTATT GCATGACGCC CGCTCGCGCT CGCTATTTGA AACGCTTAAA
CGCGATATCG CCAGCGTTTC GCCAGAAACC GAAGTGGTGA GCGTTGAGAT TGAACTGCAT
AACCCGTGGG ATTTCGAAGA GGTTTACGCC TGCCTGCATG ATTTCGCCCG TGGTTACGAG
TTTCAGCCAG AAAAAGAAGA CTATTTAATT CACATCACCA CCGGCACCCA CGTCGCGCAG
ATTTGCTGGT TTCTGCTGGC TGAAGCGCGT TACCTGCCCG CCCGGTTGAT ACAATCTTCA
CCTCCGCGCA AAAAAGAACA GCCGCGCGGC GCAGGTGAAG TGACGATTAT CGATCTCGAT
TTAAGCCTTT ATAACGCCAT CGCCAGCCGC TTTGCCGAGG AACGCCAGCA AACGCTTGAT
TTTCTTAAGT CCGGTATTGC CACGCGTAAC CCCCACTTCA ACCGCATGAT TGAGCAGATT
GAAAAAGTAG CGATTAAATC CCGCGCACCG ATCCTGCTAA ACGGCCCAAC CGGTGCGGGC
AAGTCATTTC TGGCGCGACG TATATTTGAA TTAAAACAGG CGCGGCATCA GTTTAGCGGC
GCGTTTGTGG AAGTGAACTG CGCAACCCTG CGCGGCGATA CCGCCATGTC GACGCTGTTT
GGTCATGTGA AAGGCGCGTT TACCGGGGCA CGGGAATCTC GTGAAGGATT ATTACGCAGC
GCCAACGGCG GAATGTTGTT TCTTGATGAG ATTGGCGAAC TGGGCGCAGA CGAACAGGCA
ATGCTGCTGA AAGCCATTGA AGAAAAAACC TTTTATCCGT TTGGCAGCGA TCGCCAGGTG
AGCAGTGATT TTCAGCTTAT CGCCGGAACG GTGCGTGATT TGCGCCAGCT GGTTGCCGAT
GGCAAATTCC GCGAAGATCT ATACGCGCGG ATCAATCTCT GGACCTTCAC CCTGCCGGGG
CTACGCCAGC GTCAGGAAGA TATTGAACCT AACCTGGATT ATGAAGTGGA GCGCCACGCT
TCACTCACCG GCGACAGCGT GCGTTTTAAC ACCGAAGCGC GGCGCGCCTG GCTGGCCTTT
GCGACATCTC CCCAGGCAAC ATGGCGCGGT AACTTTCGCG AGCTTTCTGC CAGCGTCACG
CGAATGGCAA CCTTTGCCTC TAGCGGACGC ATTACTCTGG ACGTGGTTGA AGATGAGATA
AACCGTCTGC GCTATAACTG GCAGGAGAGC CGCCCCTCCG CGCTTACGGC GTTGCTGGGC
GCAGAGGCAG AAAACATCGA TCTCTTCGAC CGTATGCAAC TGGAACACGT TATCGCAATC
TGCCGCCAGG CAAAGTCGCT TTCCGCAGCC GGACGCCAGC TTTTTGACGT TTCGCGCCAG
GGCAAAGCCA GCGTCAATGA CGCGGATCGG CTACGCAAAT ACCTGGCGCG TTTTGGTCTG
ACGTGGGAAG CCGTGCAGGA TCAGCACAGC TCCAGTTGA
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| Protein sequence | MRKTVAFGFV GTVLDYAGRG SQRWSKWRPS LCICQQESLV IDRLELLHDA RSRSLFETLK
RDIASVSPET EVVSVEIELH NPWDFEEVYA CLHDFARGYE FQPEKEDYLI HITTGTHVAQ
ICWFLLAEAR YLPARLIQSS PPRKKEQPRG AGEVTIIDLD LSLYNAIASR FAEERQQTLD
FLKSGIATRN PHFNRMIEQI EKVAIKSRAP ILLNGPTGAG KSFLARRIFE LKQARHQFSG
AFVEVNCATL RGDTAMSTLF GHVKGAFTGA RESREGLLRS ANGGMLFLDE IGELGADEQA
MLLKAIEEKT FYPFGSDRQV SSDFQLIAGT VRDLRQLVAD GKFREDLYAR INLWTFTLPG
LRQRQEDIEP NLDYEVERHA SLTGDSVRFN TEARRAWLAF ATSPQATWRG NFRELSASVT
RMATFASSGR ITLDVVEDEI NRLRYNWQES RPSALTALLG AEAENIDLFD RMQLEHVIAI
CRQAKSLSAA GRQLFDVSRQ GKASVNDADR LRKYLARFGL TWEAVQDQHS SS
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