Gene ECH74115_4618 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagECH74115_4618 
SymbolrpsD 
ID6967719 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameEscherichia coli O157:H7 str. EC4115 
KingdomBacteria 
Replicon accessionNC_011353 
Strand
Start bp4279147 
End bp4279767 
Gene Length621 bp 
Protein Length206 aa 
Translation table11 
GC content51% 
IMG OID643388324 
Product30S ribosomal protein S4 
Protein accessionYP_002272752 
Protein GI209396300 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0522] Ribosomal protein S4 and related proteins 
TIGRFAM ID[TIGR01017] ribosomal protein S4, bacterial/organelle type 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000445858 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones58 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCAAGAT ATTTGGGTCC TAAGCTCAAG CTGAGCCGTC GTGAGGGCAC CGACTTATTC 
CTTAAGTCTG GCGTTCGCGC GATCGATACC AAGTGTAAAA TTGAACAAGC TCCTGGCCAG
CACGGTGCGC GTAAACCGCG TCTGTCTGAC TATGGTGTGC AGTTGCGTGA AAAGCAAAAA
GTTCGCCGTA TCTATGGTGT GCTGGAGCGT CAGTTCCGTA ACTACTACAA AGAAGCAGCA
CGTCTGAAAG GCAACACTGG TGAAAACCTG TTGGCTCTGC TGGAAGGTCG TCTGGACAAC
GTTGTATACC GTATGGGCTT CGGTGCCACT CGTGCAGAAG CACGTCAGCT GGTTAGCCAT
AAAGCAATTA TGGTAAACGG TCGTGTTGTT AACATCGCTT CTTATCAGGT TAGTCCGAAT
GACGTTGTAA GCATTCGTGA GAAAGCGAAG AAGCAGTCTC GCGTGAAAGC CGCTCTGGAG
CTGGCTGAGC AGCGTGAAAA GCCAACCTGG CTGGAAGTTG ATGCTGGCAA GATGGAAGGT
ACGTTTAAGC GTAAGCCGGA GCGTTCTGAT CTGTCTGCGG ACATTAACGA ACACCTGATC
GTCGAGCTTT ACTCCAAGTA A
 
Protein sequence
MARYLGPKLK LSRREGTDLF LKSGVRAIDT KCKIEQAPGQ HGARKPRLSD YGVQLREKQK 
VRRIYGVLER QFRNYYKEAA RLKGNTGENL LALLEGRLDN VVYRMGFGAT RAEARQLVSH
KAIMVNGRVV NIASYQVSPN DVVSIREKAK KQSRVKAALE LAEQREKPTW LEVDAGKMEG
TFKRKPERSD LSADINEHLI VELYSK