| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | ECH74115_4617 |
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| Symbol | rpoA |
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| ID | 6971071 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli O157:H7 str. EC4115 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011353 |
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| Strand | - |
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| Start bp | 4278132 |
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| End bp | 4279121 |
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| Gene Length | 990 bp |
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| Protein Length | 329 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 643388323 |
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| Product | DNA-directed RNA polymerase subunit alpha |
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| Protein accession | YP_002272751 |
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| Protein GI | 209396788 |
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| COG category | [K] Transcription |
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| COG ID | [COG0202] DNA-directed RNA polymerase, alpha subunit/40 kD subunit |
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| TIGRFAM ID | [TIGR02027] DNA-directed RNA polymerase, alpha subunit, bacterial and chloroplast-type |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.00601847 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 58 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGCAGGGTT CTGTGACAGA GTTTCTAAAA CCGCGCCTGG TTGATATCGA GCAAGTGAGT
TCGACGCACG CCAAGGTGAC CCTTGAGCCT TTAGAGCGTG GCTTTGGCCA TACTCTGGGT
AACGCACTGC GCCGTATTCT GCTCTCATCG ATGCCGGGTT GCGCGGTGAC CGAGGTTGAG
ATTGATGGTG TACTACATGA GTACAGCACC AAAGAAGGCG TTCAGGAAGA TATCCTGGAA
ATCCTGCTCA ACCTGAAAGG GCTGGCGGTG AGAGTTCAGG GCAAAGATGA AGTTATTCTT
ACCTTGAATA AATCTGGCAT TGGCCCTGTG ACTGCAGCCG ATATCACCCA CGACGGTGAT
GTCGAAATCG TCAAGCCGCA GCACGTGATC TGCCACCTGA CCGATGAGAA CGCGTCTATT
AGCATGCGTA TCAAAGTTCA GCGCGGTCGT GGTTATGTGC CGGCTTCTAC CCGAATTCAT
TCGGAAGAAG ATGAGCGCCC AATCGGCCGT CTGCTGGTCG ACGCATGCTA CAGCCCTGTG
GAGCGTATTG CCTACAATGT TGAAGCAGCG CGTGTAGAAC AGCGTACCGA CCTGGACAAG
CTGGTCATCG AAATGGAAAC CAACGGCACA ATCGATCCTG AAGAGGCGAT TCGTCGTGCG
GCAACCATTC TGGCTGAACA ACTGGAAGCT TTCGTTGACT TACGTGATGT ACGTCAGCCT
GAAGTGAAAG AAGAGAAACC AGAGTTCGAT CCGATCCTGC TGCGCCCTGT TGACGATCTG
GAATTGACTG TCCGCTCTGC TAACTGCCTT AAAGCAGAAG CTATCCACTA TATCGGTGAT
CTGGTACAGC GTACCGAGGT TGAGCTCCTT AAAACGCCTA ACCTTGGTAA AAAATCTCTT
ACTGAGATTA AAGACGTGCT GGCTTCCCGT GGACTGTCTC TGGGCATGCG CCTGGAAAAC
TGGCCACCGG CAAGCATCGC TGACGAGTAA
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| Protein sequence | MQGSVTEFLK PRLVDIEQVS STHAKVTLEP LERGFGHTLG NALRRILLSS MPGCAVTEVE
IDGVLHEYST KEGVQEDILE ILLNLKGLAV RVQGKDEVIL TLNKSGIGPV TAADITHDGD
VEIVKPQHVI CHLTDENASI SMRIKVQRGR GYVPASTRIH SEEDERPIGR LLVDACYSPV
ERIAYNVEAA RVEQRTDLDK LVIEMETNGT IDPEEAIRRA ATILAEQLEA FVDLRDVRQP
EVKEEKPEFD PILLRPVDDL ELTVRSANCL KAEAIHYIGD LVQRTEVELL KTPNLGKKSL
TEIKDVLASR GLSLGMRLEN WPPASIADE
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