| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | ECH74115_4522 |
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| Symbol | lptA |
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| ID | 6972168 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli O157:H7 str. EC4115 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011353 |
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| Strand | + |
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| Start bp | 4187500 |
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| End bp | 4188057 |
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| Gene Length | 558 bp |
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| Protein Length | 185 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 643388235 |
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| Product | lipopolysaccharide transport periplasmic protein LptA |
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| Protein accession | YP_002272670 |
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| Protein GI | 209396095 |
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| COG category | [S] Function unknown |
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| COG ID | [COG1934] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR03002] lipopolysaccharide transport periplasmic protein LptA |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.599849 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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| |
Fosmid Coverage information |
| Num covering fosmid clones | 53 |
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| Fosmid unclonability p-value | 0.710923 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAAATTCA AAACAAACAA ACTCAGCCTT AATCTTGTGC TTGCCAGCTC ACTTCTGGCC
GCCAGCATTC CGGCATTTGC CGTAACCGGA GACACTGATC AGCCGATACA CATTGAATCG
GACCAGCAAT CTCTTGATAT GCAAGGCAAC GTGGTTACCT TTACCGGTAA TGTCATCGTC
ACCCAGGGCA CCATAAAAAT TAATGCCGAC AAAGTGGTCG TTACCCGTCC GGGTGGCGAA
CAAGGTAAAG AAGTGATTGA CGGCTACGGT AAACCGGCAA CGTTCTACCA GATGCAGGAC
AACGGTAAAC CCGTTGAAGG TCACGCTTCC CAGATGCACT ACGAACTGGC AAAAGATTTT
GTCGTTCTGA CGGGTAATGC TTATCTGCAG CAGGTCGATA GCAACATTAA GGGCGATAAG
ATCACTTACC TGGTGAAAGA GCAGAAAATG CAGGCTTTCA GCGACAAAGG CAAGCGTGTA
ACCACCGTTC TGGTGCCGTC GCAGCTGCAG GACAAAAACA ACAAAGGCCA GACCCCGGCA
CAGAAGAAGG GTAATTAA
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| Protein sequence | MKFKTNKLSL NLVLASSLLA ASIPAFAVTG DTDQPIHIES DQQSLDMQGN VVTFTGNVIV
TQGTIKINAD KVVVTRPGGE QGKEVIDGYG KPATFYQMQD NGKPVEGHAS QMHYELAKDF
VVLTGNAYLQ QVDSNIKGDK ITYLVKEQKM QAFSDKGKRV TTVLVPSQLQ DKNNKGQTPA
QKKGN
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