| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | ECH74115_4455 |
|---|
| Symbol | agaB |
|---|
| ID | 6971032 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli O157:H7 str. EC4115 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011353 |
|---|
| Strand | + |
|---|
| Start bp | 4128793 |
|---|
| End bp | 4129269 |
|---|
| Gene Length | 477 bp |
|---|
| Protein Length | 158 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 643388175 |
|---|
| Product | PTS system N-acetylgalactosamine-specific transporter subunit IIB |
|---|
| Protein accession | YP_002272612 |
|---|
| Protein GI | 209399155 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG3444] Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB |
|---|
| TIGRFAM ID | [TIGR00854] PTS system, mannose/fructose/sorbose family, IIB component |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.349937 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 64 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCAGTC CAAATATTCT CTTAACCCGT ATTGATAACC GTCTGGTTCA CGGTCAGGTT
GGCGTGACCT GGACATCCAC CATCGGTGCG AATCTGCTGG TAGTCGTGGA TGATGTTGTC
GCTAACGATG ATATTCAACA GAAATTAATG GGTATTACCG CAGAAACCTA CGGCTTTGGC
ATTCGTTTCT TTACTATCGA AAAAACCATT AACGTCATCG GCAAAGCTGC ACCGCATCAG
AAGATCTTCC TGATTTGCCG TACGCCACAA ACGGTACGTA AATTGGTAGA AGGTGGCATT
GACCTGAAAG ATGTCAACGT CGGCAATATG CATTTCTCGG AAGGGAAAAA GCAAATCAGC
AGTAAAGTTT ATGTCGATGA CCAGGATCTC ACGGACTTAC GTTTTATTAA ACAACGTGGC
GTGAATGTTT TCATTCAGGA CGTCCCTGGC GATCAAAAAG AACAAATCCC TGACTAA
|
|---|
| Protein sequence | MSSPNILLTR IDNRLVHGQV GVTWTSTIGA NLLVVVDDVV ANDDIQQKLM GITAETYGFG
IRFFTIEKTI NVIGKAAPHQ KIFLICRTPQ TVRKLVEGGI DLKDVNVGNM HFSEGKKQIS
SKVYVDDQDL TDLRFIKQRG VNVFIQDVPG DQKEQIPD
|
|---|
| |