Gene ECH74115_4439 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagECH74115_4439 
SymbolgarP 
ID6968333 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameEscherichia coli O157:H7 str. EC4115 
KingdomBacteria 
Replicon accessionNC_011353 
Strand
Start bp4115891 
End bp4117225 
Gene Length1335 bp 
Protein Length444 aa 
Translation table11 
GC content51% 
IMG OID643388159 
Productgalactarate permease GarP 
Protein accessionYP_002272596 
Protein GI209400778 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2271] Sugar phosphate permease 
TIGRFAM ID[TIGR00893] d-galactonate transporter 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones48 
Fosmid unclonability p-value0.333242 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATTCTGG ACACCGTTGA CGAAAAAAAG AAAGGCGTGC ATACCCGCTA TTTAATATTA 
CTGATTATTT TTATTGTTAC CGCCGTTAAC TACGCCGATC GTGCAACGCT GTCTATTGCT
GGTACCGAAG TGGCAAAAGA GTTGCAGTTA AGTGCGGTTT CGATGGGTTA CATCTTTTCT
GCTTTTGGCT GGGCCTACTT GCTGATGCAA ATCCCCGGCG GCTGGCTGCT TGATAAGTTT
GGCTCGAAAA AAGTTTACAC CTACAGCCTC TTTTTCTGGT CGCTATTCAC CTTCCTGCAA
GGCTTTGTTG ATATGTTCCC GCTGGCCTGG GCAGGGATCT CCATGTTCTT TATGCGCTTT
ATGCTCGGCT TCTCGGAAGC GCCATCATTC CCGGCGAACG CCCGTATTGT CGCCGCCTGG
TTCCCGACGA AAGAACGTGG TACTGCCTCC GCCATCTTTA ACTCGGCGCA ATATTTCTCG
CTGGCGCTCT TTTCGCCTCT GCTTGGCTGG CTGACTTTCG CCTGGGGCTG GGAGCACGTC
TTTACCGTTA TGGGGGTGAT TGGTTTTGTG CTGACGGCGC TGTGGATCAA ATTGATTCAT
AACCCGACAG ATCACCCACG TATGTCTGCG GAAGAGCTGA AGTTTATCTC TGAAAATGGC
GCGGTGGTCG ATATGGACCA CAAAAAGCCG GGCAGTGCGG CAGCAAGCGG ACCCAAACTG
CATTACATCA AGCAATTGCT CTCTAACCGC ATGATGTTGG GCGTATTTTT CGGACAATAT
TTTATCAACA CCATCACCTG GTTCTTCCTC ACCTGGTTCC CGATTTATCT GGTGCAGGAA
AAAGGTATGT CGATTCTGAA AGTGGGTCTG GTCGCCTCGA TTCCAGCACT GTGTGGTTTT
GCGGGCGGCG TGCTGGGAGG TGTCTTCTCG GATTATCTGA TCAAACGCGG TTTATCCCTG
ACCCTGGCAC GTAAGCTACC GATTGTGCTG GGAATGTTGC TGGCTTCCAC CATCATCTTA
TGTAACTACA CCAACAACAC CACGCTGGTG GTCATGCTGA TGGCGCTGGC TTTCTTTGGT
AAAGGATTTG GTGCGCTGGG CTGGCCGGTG ATTTCTGACA CCGCGCCTAA AGAGATTGTT
GGCCTCTGCG GCGGCGTCTT TAACGTCTTT GGCAATGTTG CCTCCATTGT CACTCCACTG
GTGATTGGCT ACCTGGTAAG TGAACTGCAC TCCTTCAATG CAGCACTGGT TTTCGTGGGA
TGTTCAGCGC TAATGGCGAT GGTCTGCTAC CTCTTCGTAG TTGGCGACAT TAAACGTATG
GAATTGCAGA AATAA
 
Protein sequence
MILDTVDEKK KGVHTRYLIL LIIFIVTAVN YADRATLSIA GTEVAKELQL SAVSMGYIFS 
AFGWAYLLMQ IPGGWLLDKF GSKKVYTYSL FFWSLFTFLQ GFVDMFPLAW AGISMFFMRF
MLGFSEAPSF PANARIVAAW FPTKERGTAS AIFNSAQYFS LALFSPLLGW LTFAWGWEHV
FTVMGVIGFV LTALWIKLIH NPTDHPRMSA EELKFISENG AVVDMDHKKP GSAAASGPKL
HYIKQLLSNR MMLGVFFGQY FINTITWFFL TWFPIYLVQE KGMSILKVGL VASIPALCGF
AGGVLGGVFS DYLIKRGLSL TLARKLPIVL GMLLASTIIL CNYTNNTTLV VMLMALAFFG
KGFGALGWPV ISDTAPKEIV GLCGGVFNVF GNVASIVTPL VIGYLVSELH SFNAALVFVG
CSALMAMVCY LFVVGDIKRM ELQK