| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | ECH74115_4349 |
|---|
| Symbol | tolC |
|---|
| ID | 6970005 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli O157:H7 str. EC4115 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011353 |
|---|
| Strand | + |
|---|
| Start bp | 4027292 |
|---|
| End bp | 4028773 |
|---|
| Gene Length | 1482 bp |
|---|
| Protein Length | 493 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 643388076 |
|---|
| Product | outer membrane channel protein |
|---|
| Protein accession | YP_002272514 |
|---|
| Protein GI | 209400811 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1538] Outer membrane protein |
|---|
| TIGRFAM ID | [TIGR01844] type I secretion outer membrane protein, TolC family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.823303 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 71 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGAAAT TGCTCCCCAT TCTTATCGGC CTGAGCCTTT CTGGGTTCAG TTCGTTGAGC
CAGGCCGAGA ACCTGATGCA AGTTTATCAG CAAGCACGCC TTAGTAACCC GGAATTGCGT
AAGTCTGCCG CCGATCGTGA TGCTGCCTTT GAAAAAATTA ATGAAGCGCG CAGTCCATTA
CTGCCACAGC TAGGTTTAGG TGCAGATTAC ACCTATAGCA ACGGCTACCG CGACGCGAAC
GGCATCAACT CTAACGCGAC CAGTGCGTCC CTGCAGTTAA CTCAATCCAT TTTTGATATG
TCGAAATGGC GTGCGTTAAC GCTGCAGGAA AAAGCAGCAG GGATTCAGGA CGTCACGTAT
CAGACCGATC AGCAAACCTT GATCCTCAAC ACCGCGACCG CTTATTTCAA CGTGTTGAAT
GCTATTGACG TTCTTTCCTA TACACAGGCG CAAAAAGAAG CGATCTACCG TCAATTAGAT
CAAACCACCC AACGTTTTAA CGTGGGCCTG GTAGCGATCA CCGACGTGCA GAACGCCCGC
GCGCAGTACG ATACCGTGCT GGCGAACGAA GTGACCGCAC GTAATAACCT TGATAACGCG
GTAGAGCAGC TGCGCCAGAT CACCGGTAAC TACTATCCGG AACTGGCGGC GCTGAATGTC
GAAAACTTTA AAACCGACAA ACCACAGCCG GTTAACGCGC TGCTGAAAGA AGCCGAAAAA
CGCAACCTGT CGCTGTTACA GGCACGCTTG AGCCAGGACC TGGCGCGCGA GCAAATTCGC
CAGGCGCAGG ATGGTCACTT ACCGACTCTG GATTTAACGG CTTCTAGCGG GATTTCTGAC
ACCTCTTATA GCGGTTCGAA AACCCGTGGT GCCGCTGGTA CCCAGTATGA CGATAGCAAT
ATGGGCCAGA ACAAAGTTGG CCTGAGCTTC TCGCTGCCGA TTTATCAGGG CGGAATGGTT
AACTCGCAGG TGAAACAGGC ACAGTACAAC TTTGTTGGTG CCAGCGAGCA ACTGGAAAGC
GCGCATCGTA GCGTCGTGCA GACCGTACGT TCCTCTTTCA ACAACATTAA TGCTTCTATC
AGTAGTATTA ACGCCTACAA ACAAGCCGTA GTTTCCGCTC AAAGCTCATT AGACGCGATG
GAAGCGGGCT ACTCGGTCGG TACGCGTACC ATTGTTGATG TGTTGGATGC GACCACCACG
CTGTACAACG CCAAGCAAGA GCTGGCGAAT GCGCGTTATA ACTACCTGAT TAATCAGCTG
AATATTAAGT CAGCCCTGGG TACGTTGAAC GAGCAGGATC TGCTGGCACT GAACAATGCG
CTGAGCAAAC CGGTTTCCAC TAATCCGGAA AACGTTGCCC CGCAAACGCC GGAACAGAAT
GCTATTGCTG ATGGTTATGC GCCTGATAGC CCGGCACCCG TCGTTCAGCA AACATCCGCA
CGCACTACCA CCAGTAACGG TCATAACCCT TTCCGTAACT GA
|
|---|
| Protein sequence | MKKLLPILIG LSLSGFSSLS QAENLMQVYQ QARLSNPELR KSAADRDAAF EKINEARSPL
LPQLGLGADY TYSNGYRDAN GINSNATSAS LQLTQSIFDM SKWRALTLQE KAAGIQDVTY
QTDQQTLILN TATAYFNVLN AIDVLSYTQA QKEAIYRQLD QTTQRFNVGL VAITDVQNAR
AQYDTVLANE VTARNNLDNA VEQLRQITGN YYPELAALNV ENFKTDKPQP VNALLKEAEK
RNLSLLQARL SQDLAREQIR QAQDGHLPTL DLTASSGISD TSYSGSKTRG AAGTQYDDSN
MGQNKVGLSF SLPIYQGGMV NSQVKQAQYN FVGASEQLES AHRSVVQTVR SSFNNINASI
SSINAYKQAV VSAQSSLDAM EAGYSVGTRT IVDVLDATTT LYNAKQELAN ARYNYLINQL
NIKSALGTLN EQDLLALNNA LSKPVSTNPE NVAPQTPEQN AIADGYAPDS PAPVVQQTSA
RTTTSNGHNP FRN
|
|---|
| |