| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | ECH74115_4149 |
|---|
| Symbol | |
|---|
| ID | 6972017 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli O157:H7 str. EC4115 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011353 |
|---|
| Strand | - |
|---|
| Start bp | 3836831 |
|---|
| End bp | 3838534 |
|---|
| Gene Length | 1704 bp |
|---|
| Protein Length | 567 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 39% |
|---|
| IMG OID | 643387897 |
|---|
| Product | type III secretion outer membrane pore, YscC/HrcC family |
|---|
| Protein accession | YP_002272337 |
|---|
| Protein GI | 209395847 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1450] Type II secretory pathway, component PulD |
|---|
| TIGRFAM ID | [TIGR02516] type III secretion outer membrane pore, YscC/HrcC family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 37 |
|---|
| Fosmid unclonability p-value | 0.0153519 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAATAA AATTACGCAT TACTATTATA TTAATTTCAG TCTTATGCAT TTTTAATGGA
TTATTGACTC CTGGTGCATA TGCCGCAGCA GCGAATGGAT ACGTAGCAAA TAAAGAAAAT
CTACGTAGTT TTTTTGAAAC GGTTTCATCA TATGCGGGTA AGCCTACAAT AGTTAGTAAG
CTTGCCATGA AGAAACAGAT CAGCGGAAAT TTTGATTTAA CAGAACCCTA TGCCTTGATT
GAACGCCTGT CGGCACAGAT GGGGCTTATT TGGTATGATG ATGGCAAAGC TATTTATATC
TATGACTCAT CAGAGATGCG TAATGCATTG ATTAATCTGA GAAAGGTATC GACGAATGAG
TTTAATAATT TCTTAAAAAA ATCGGGTCTG TATAACTCTC GTTATGAAAT TAAAGGGGAC
GGCAATGGTA CTTTCTATGT ATCGGGGCCA CCGGTTTATG TTGACCTGGT CGTTAATGCT
GCGAAATTAA TGGAGCAAAA CAGCGATGGC ATTGAGATCG GTCGAAATAA AGTAGGAATA
ATTCATCTGG TCAACACATT CGTTAATGAC CGGACTTATG AGTTACGTGG CGAAAAGATA
GTTATTCCTG GCATGGCAAA AGTACTATCG ACGTTGTTAA ATAATAACAT TAAGCAAAGC
ACAGGGGTGA ACGTACTTTC TGAAATTTCA AGTCGTCAAC AACTAAAAAA CGTATCACGT
ATGCCTCCTT TTCCTGGGGC TGAAGAAGAT GATGACCTAC AAGTAGAGAA AATAATATCG
ACAGCAGGAG CGCCAGAGAC TGACGATATA CAAATTATTG CATATCCTGA TACCAACAGT
TTACTTGTTA AAGGAACAGT ATCTCAGGTT GATTTTATCG AGAAGTTAGT AGCTACGCTT
GATATTCCAA AGCGACACAT TGAATTATCT TTATGGATAA TAGATATTGA TAAGACTGAT
CTAGAACAGC TAGGTGCTGA CTGGTCGGGC ACGATAAAAA TTGGATCCAG CTTAAGTGCA
TCATTTAATA ATTCAGGTTC AATTAGTACC CTTGATGGGA CACAGTTTAT TGCAACAATA
CAGGCACTTG CACAAAAAAG AAGAGCCGCC GTTGTTGCTC GTCCCGTCGT TTTAACACAA
GAGAATATTC CTGCTATATT TGATAATAAC CGCACTTTCT ATACTAAATT AGTCGGCGAG
CGTACTGCGG AATTGGATGA AGTAACCTAT GGTACGATGA TTAGCGTGCT ACCACGATTT
GCTGCGCGAA ATCAAATTGA ATTACTCTTG AATATTGAAG ATGGAAATGA AATCAATTCC
GACAAGACCA ATGTTGATGA TCTGCCTCAG GTTGGTAGAA CACTTATAAG TACTATTGCA
CGCGTGCCCC AAGGGAAAAG TCTTTTGATT GGGGGATATA CACGCGATAC GAATACCTAT
GAAAGTCGCA AGATCCCAAT ATTAGGCAGC ATTCCATTTA TTGGTAAATT ATTTGGTTAT
GAAGGAACAA ATGCGAATAA CATCGTTCGT GTCTTTCTTA TTGAGCCAAG AGAGATCGAT
GAACGCATGA TGAATAATGC GAATGAGGCT GCGGTTGATG CCAGAGCGAT TACACAGCAA
ATGGCAAAAA ATAAAGAAAT CAACGATGAA TTACTGCAGA AATGGATAAA AACTTACCTG
AATCGTGAAG TCGTCGGAGG ATAG
|
|---|
| Protein sequence | MKIKLRITII LISVLCIFNG LLTPGAYAAA ANGYVANKEN LRSFFETVSS YAGKPTIVSK
LAMKKQISGN FDLTEPYALI ERLSAQMGLI WYDDGKAIYI YDSSEMRNAL INLRKVSTNE
FNNFLKKSGL YNSRYEIKGD GNGTFYVSGP PVYVDLVVNA AKLMEQNSDG IEIGRNKVGI
IHLVNTFVND RTYELRGEKI VIPGMAKVLS TLLNNNIKQS TGVNVLSEIS SRQQLKNVSR
MPPFPGAEED DDLQVEKIIS TAGAPETDDI QIIAYPDTNS LLVKGTVSQV DFIEKLVATL
DIPKRHIELS LWIIDIDKTD LEQLGADWSG TIKIGSSLSA SFNNSGSIST LDGTQFIATI
QALAQKRRAA VVARPVVLTQ ENIPAIFDNN RTFYTKLVGE RTAELDEVTY GTMISVLPRF
AARNQIELLL NIEDGNEINS DKTNVDDLPQ VGRTLISTIA RVPQGKSLLI GGYTRDTNTY
ESRKIPILGS IPFIGKLFGY EGTNANNIVR VFLIEPREID ERMMNNANEA AVDARAITQQ
MAKNKEINDE LLQKWIKTYL NREVVGG
|
|---|
| |