| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | ECH74115_4141 |
|---|
| Symbol | spaP |
|---|
| ID | 6970997 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli O157:H7 str. EC4115 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011353 |
|---|
| Strand | - |
|---|
| Start bp | 3829402 |
|---|
| End bp | 3830067 |
|---|
| Gene Length | 666 bp |
|---|
| Protein Length | 221 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 35% |
|---|
| IMG OID | 643387891 |
|---|
| Product | surface presentation of antigens protein SpaP |
|---|
| Protein accession | YP_002272331 |
|---|
| Protein GI | 209399259 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG4790] Type III secretory pathway, component EscR |
|---|
| TIGRFAM ID | [TIGR01102] type III secretion apparatus protein, YscR/HrcR family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 35 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 33 |
|---|
| Fosmid unclonability p-value | 0.00118649 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGTCAAATA GCATTTCGCT GATAGCGATA CTATCATTAT TTACACTATT GCCGTTTATA
ATAGCATCCG GGACATGTTT TATTAAATTC TCGATTGTTT TTGTTATTGT CCGAAACGCA
TTGGGACTTC AGCAAGTGCC ATCAAATATG ACACTTAATG GGGTTGCTTT GCTATTGTCA
ATGTTTGTAA TGATGCCGGT TGGGAAGGAA ATATATTATA ACAGTCAGAA TGAGAATCTT
TCATTCAATA ATGTAGCGTC GGTTGTTAAT TTTGTTGAGA CAGGCATGAG TGGTTATAAA
TCATATTTGA TAAAATATTC TGAACCGGAG TTGGTTAGCT TTTTTGAAAA GATTCAGAAG
GTGAATAGTT CTGAAGACAA TGAAGAGATA ATCGATGATG ATAATATTTC AATTTTCTCG
TTACTCCCGG CATATGCGTT AAGTGAGATA AAAAGTGCAT TTATTATAGG TTTTTATATC
TATTTACCCT TTGTTGTAGT GGATCTGGTT ATATCCAGCG TTCTGTTAAC GTTAGGTATG
ATGATGATGA GTCCGGTAAC CATATCTACA CCGATAAAAT TAATTCTGTT TGTCGCGATG
GACGGTTGGA CAATGTTATC AAAAGGACTC ATATTACAAT ATTTTGACCT ATCCATTAAT
CCCTGA
|
|---|
| Protein sequence | MSNSISLIAI LSLFTLLPFI IASGTCFIKF SIVFVIVRNA LGLQQVPSNM TLNGVALLLS
MFVMMPVGKE IYYNSQNENL SFNNVASVVN FVETGMSGYK SYLIKYSEPE LVSFFEKIQK
VNSSEDNEEI IDDDNISIFS LLPAYALSEI KSAFIIGFYI YLPFVVVDLV ISSVLLTLGM
MMMSPVTIST PIKLILFVAM DGWTMLSKGL ILQYFDLSIN P
|
|---|
| |