| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | ECH74115_4109 |
|---|
| Symbol | lysR |
|---|
| ID | 6970422 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli O157:H7 str. EC4115 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011353 |
|---|
| Strand | + |
|---|
| Start bp | 3805819 |
|---|
| End bp | 3806754 |
|---|
| Gene Length | 936 bp |
|---|
| Protein Length | 311 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 643387863 |
|---|
| Product | DNA-binding transcriptional regulator LysR |
|---|
| Protein accession | YP_002272303 |
|---|
| Protein GI | 209399771 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 0.0000450007 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGCCGCCG TTAACTTACG TCATATTGAA ATTTTTCATG CGGTAATGAC CGCCGGAAGC
CTGACTGAGG CAGCACACCT GCTACACACC TCACAGCCAA CCGTCAGCCG CGAACTGGCG
CGCTTTGAGA AGGTGATCGG GCTGAAATTG TTTGAGCGCG TACGTGGACG ATTACATCCT
ACCGTGCAAG GACTGCGTCT GTTTGAAGAA GTGCAACGAT CCTGGTACGG ACTGGATCGC
ATTGTCAGCG CCGCAGAAAG TCTGCGCGAG TTTCGCCAGG GAGAACTGTC TATTGCCTGC
CTGCCGGTCT TTTCGCAATC TTTTTTACCG CAGCTCCTGC AACCCTTTCT GGTACGTTAT
CCCGATGTCA GCTTAAATAT CGTGCCCCAG GAATCACCGC TACTTGAAGA GTGGCTCTCG
GCCCAGCGTC ATGATTTAGG ACTCACTGAG ACACTCCATA CGCCTGCGGG AACAGAACGT
ACCGAATTAC TCTCTTTAGA TGAATTGTGT GTGTTACCTC CGGGTCATCC GCTGGCGGTA
AAAAAGGTAT TAACGCCGGA TGATTTTCAG GGTGAGAACT ACATCAGCCT TTCCCGTACT
GACAGCTATC GCCAGTTGCT GGATCAGCTA TTTACTGAAC ATCAGGTTAA ACGACGCATG
ATCGTAGAAA CCCACAGCGC CGCGTCAGTC TGCGCAATGG TACGGGCGGG GGTAGGTGTT
TCGGTGGTTA ACCCGCTCAC CGCACTGGAT TATGCGGCAA GCGGTTTAGT GGTGCGGCGG
TTCAGTATTG CGGTTCCGTT CACCGTCAGC CTGATCCGCC CCCTGCACCG CCCGTCATCA
GCGCTGGTGC AGGCGTTTAG TGAGCATTTA CAAGCGGGGT TACCGAAACT GGTCACTTCT
CTTGACGCTA TTTTGTCGTC AGCTACGACA GCATAA
|
|---|
| Protein sequence | MAAVNLRHIE IFHAVMTAGS LTEAAHLLHT SQPTVSRELA RFEKVIGLKL FERVRGRLHP
TVQGLRLFEE VQRSWYGLDR IVSAAESLRE FRQGELSIAC LPVFSQSFLP QLLQPFLVRY
PDVSLNIVPQ ESPLLEEWLS AQRHDLGLTE TLHTPAGTER TELLSLDELC VLPPGHPLAV
KKVLTPDDFQ GENYISLSRT DSYRQLLDQL FTEHQVKRRM IVETHSAASV CAMVRAGVGV
SVVNPLTALD YAASGLVVRR FSIAVPFTVS LIRPLHRPSS ALVQAFSEHL QAGLPKLVTS
LDAILSSATT A
|
|---|
| |