| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | ECH74115_4075 |
|---|
| Symbol | csdA |
|---|
| ID | 6971927 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli O157:H7 str. EC4115 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011353 |
|---|
| Strand | + |
|---|
| Start bp | 3770134 |
|---|
| End bp | 3771339 |
|---|
| Gene Length | 1206 bp |
|---|
| Protein Length | 401 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 643387833 |
|---|
| Product | cysteine sulfinate desulfinase |
|---|
| Protein accession | YP_002272276 |
|---|
| Protein GI | 209397968 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0520] Selenocysteine lyase |
|---|
| TIGRFAM ID | [TIGR01979] cysteine desulfurases, SufS subfamily
[TIGR03392] cysteine desulfurase, catalytic subunit CsdA |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.023337 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 78 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACGTTT TTAATCCCGC GCAGTTTCGC GCCCAGTTTC CCGCTCTACA GGATGCGGGC
GTCTATCTCG ACAGCGCCGC GACCGCGCTT AAACCTGAAG CCGTGGTTGA AGCCACCCGA
CAGTTTTACA GTCTGAGCGC CGGAAACGTC CATCGCAGCC AGTTTGCCGA AGCCCAACGC
CTGACCGCGC GTTATGAAGC TGCACGAGAG AAAGTGGCGC AATTACTGAA TGCACCGGAT
GATAAAACTA TCGTCTGGAC GCGCGGCACC ACTGAATCCA TCAACATGGT GGCACAATGC
TATGCGCGTC CGCGTCTGCA ACCGGGCGAT GAGATTATTG TCAGCGTGGC AGAACACCAC
GCCAACCTCG TCCCCTGGCT GATGGTCGCC CAACAAACTG GAGCCAAAGT GGTCAAATTG
CCGCTTAATG CGCAGCGACT GCCAGATGTC GATTTGCTGC CGGAACTGAT TACTCCCCGT
AGTCGGATTC TGGCGTTGGG TCAGATGTCG AACGTAACTG GCGGTTGCCC GGATCTGGCG
CGAGCGATTA CCTTTGCTCA TTCAGCCGGG ATAGTGGTGA TAGTTGATGG TGCTCAGGGG
GCGGTGCATT TCCCCGCGGA TGTTCAGCAA CTGGATATCG ATTTCTATGC TTTCTCTGGT
CACAAACTGT ATGGCCCGAC GGGTATCGGC GTGCTGTATG GCAAATCAGA ACTGCTGGAA
GCGATGTCGC CCTGGCTGGG CGGCGGCAAA ATGGTTCACG AAGTGAGTTT TGACGGCTTC
ACGACTCAAT CTGCGCCGTG GAAACTGGAA GCAGGAACGC CAAATGTGGC TGGTGTCATA
GGATTAAGCG CGGCGCTGGA ATGGCTGGCA GATTACGATA TCAACCAGGC CGAAAACTGG
AGCCGTAGCT TAGCAACGCT GGCGGAAGAT GCGCTGGCGA AACGTCCAGG CTTTCGTTCA
TTCCGCTGCC AGGATTCCAG CCTGCTGGCC TTTGATTTTG CTGGCGTTCA TCACAGCGAT
ATGGTGACGC TGCTGGCGGA GTACGGTATT GCCTTGCGGG CCGGGCAACA TTGCGCTCAG
CCGCTACTGG CAGAATTAGG CGTGACCGGC ACACTGCGCG CCTCTTTTGC GCCATATAAT
ACAAAGAGTG ATGTGGATGC GCTGGTGAAT GCCGTTGACC GCGCGCTGGA ATTATTGGTG
GATTAA
|
|---|
| Protein sequence | MNVFNPAQFR AQFPALQDAG VYLDSAATAL KPEAVVEATR QFYSLSAGNV HRSQFAEAQR
LTARYEAARE KVAQLLNAPD DKTIVWTRGT TESINMVAQC YARPRLQPGD EIIVSVAEHH
ANLVPWLMVA QQTGAKVVKL PLNAQRLPDV DLLPELITPR SRILALGQMS NVTGGCPDLA
RAITFAHSAG IVVIVDGAQG AVHFPADVQQ LDIDFYAFSG HKLYGPTGIG VLYGKSELLE
AMSPWLGGGK MVHEVSFDGF TTQSAPWKLE AGTPNVAGVI GLSAALEWLA DYDINQAENW
SRSLATLAED ALAKRPGFRS FRCQDSSLLA FDFAGVHHSD MVTLLAEYGI ALRAGQHCAQ
PLLAELGVTG TLRASFAPYN TKSDVDALVN AVDRALELLV D
|
|---|
| |