| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | ECH74115_3992 |
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| Symbol | rpoS |
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| ID | 6967777 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli O157:H7 str. EC4115 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011353 |
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| Strand | - |
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| Start bp | 3691527 |
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| End bp | 3692519 |
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| Gene Length | 993 bp |
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| Protein Length | 330 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 643387761 |
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| Product | RNA polymerase sigma factor RpoS |
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| Protein accession | YP_002272204 |
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| Protein GI | 209395891 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02394] RNA polymerase sigma factor RpoS
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 72 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTCAGA ATACGCTGAA AGTTCATGAT TTAAATGAAG ATGCGGAATT TGATGAGAAC
GGAGTTGAGG TTTTTGACGA AAAGGCCTTA GTAGAAGAGG AACCCAGTGA TAACGATTTG
GCCGAAGAGG AACTGTTATC GCAGGGAGCC ACACAGCGTG TGTTGGACGC GACTCAGCTT
TACCTTGGTG AGATTGGTTA TTCACCACTG TTAACGGCCG AAGAAGAAGT TTATTTTGCG
CGTCGCGCAC TGCGTGGAGA TGTCGCCTCT CGCCGCCGGA TGATCGAGAG TAACTTGCGT
CTGGTGGTAA AAATTGCCCG CCGTTATGGC AATCGTGGTC TGGCGTTGCT GGACCTTATC
GAAGAGGGCA ACCTGGGGCT GATCCGTGCG GTAGAGAAGT TTGACCCGGA ACGTGGTTTC
CGCTTCTCAA CATACGCAAC CTGGTGGATT CGCCAGACGA TTGAACGGGC GATTATGAAC
CAAACCCGTA CTATTCGTTT GCCGATTCAC ATCGTAAAGG AGCTGAACGT TTACCTGCGA
ACCGCACGTG AGTTGTCCCA TAAGCTGGAC CATGAACCAA GTGCGGAAGA GATCGCAGAG
CAACTGGATA AGCCAGTTGA TGACGTCAGC CGTATGCTTC GTCTTAACGA GCGCATTACC
TCGGTAGACA CCCCGCTGGG TGGTGATTCC GAAAAAGCGT TGCTGGACAT CCTGGCCGAT
GAAAAAGAGA ACGGTCCGGA AGATACCACG CAAGATGACG ATATGAAGCA GAGCATCGTC
AAATGGCTGT TCGAGCTGAA CGCCAAACAG CGTGAAGTAC TGGCACGTCG ATTCGGTTTG
CTGGGGTACG AAGCGGCAAC ACTGGAAGAT GTAGGTCGTG AAATTGGCCT CACCCGTGAA
CGTGTTCGCC AGATTCAGGT TGAAGGCCTG CGCCGTTTGC GCGAAATCCT GCAAACGCAG
GGGCTGAATA TCGAAGCGCT GTTCCGCGAG TAA
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| Protein sequence | MSQNTLKVHD LNEDAEFDEN GVEVFDEKAL VEEEPSDNDL AEEELLSQGA TQRVLDATQL
YLGEIGYSPL LTAEEEVYFA RRALRGDVAS RRRMIESNLR LVVKIARRYG NRGLALLDLI
EEGNLGLIRA VEKFDPERGF RFSTYATWWI RQTIERAIMN QTRTIRLPIH IVKELNVYLR
TARELSHKLD HEPSAEEIAE QLDKPVDDVS RMLRLNERIT SVDTPLGGDS EKALLDILAD
EKENGPEDTT QDDDMKQSIV KWLFELNAKQ REVLARRFGL LGYEAATLED VGREIGLTRE
RVRQIQVEGL RRLREILQTQ GLNIEALFRE
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