Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | ECH74115_3919 |
Symbol | nrdE |
ID | 6968571 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Escherichia coli O157:H7 str. EC4115 |
Kingdom | Bacteria |
Replicon accession | NC_011353 |
Strand | + |
Start bp | 3629734 |
End bp | 3631878 |
Gene Length | 2145 bp |
Protein Length | 714 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 643387693 |
Product | ribonucleotide-diphosphate reductase subunit alpha |
Protein accession | YP_002272141 |
Protein GI | 209398305 |
COG category | [F] Nucleotide transport and metabolism |
COG ID | [COG0209] Ribonucleotide reductase, alpha subunit |
TIGRFAM ID | [TIGR02506] ribonucleoside-diphosphate reductase, alpha subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 42 |
Fosmid unclonability p-value | 0.109191 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGGCAACGA CAACCGCAGA ATGCCTGACG CAGAAAACGA TGGATTACCA CGCGCTGAAT GCGATGCTTA ACCTCTACGA TAGCGCAGGT CGCATTCAGT TCGATAAAGA CCGCCAGGCC GTTGACGCCT TTATGGCGAC GCATGTGCGT CCGAACAGTG TGACCTTCAG TAGCCAGCAG CAGCGCCTGA ACTGGCTGGT CAACGAAGGT TACTATGATG AAAGCGTTCT TAATCGCTAC TCTCGCGACT TTGTCATTAC GCTGTTTGCC CACGCACACA CCAGCGGTTT TCGTTTCCAG ACATTCCTCG GGGCATGGAA GTTTTACACC AGCTATACGT TGAAGACATT CGACGGTAAA CGTTATCTGG AAGATTTTGC CGATCGAGTC ACGATGGTGG CGCTGACGCT GGCACAAGGC GATGAGACGC TGGCGTTGCA ACTGACAGAT GAAATGCTGT CAGGACGCTT TCAGCCAGCC ACGCCAACAT TCCTCAACTG CGGTAAGCAG CAGCGCGGCG AACTGGTTTC CTGTTTTTTG CTGCGTATTG AAGACAATAT GGAGTCGATT GGTCGGGCGG TAAATTCCGC ACTGCAACTG TCGAAACGCG GCGGCGGCGT AGCATTTTTG CTGTCGAATC TGCGGGAAGC GGGCGCGCCA ATTAAACGTA TTGAAAATCA ATCTTCTGGC GTAATTCCGG TGATGAAAAT GCTGGAAGAC GCATTTTCCT ATGCCAACCA ACTCGGCGCT CGTCAGGGGG CTGGTGCAGT CTATTTACAT GCTCATCATC CCGATATTCT GCGTTTTCTC GACACGAAAC GGGAAAATGC CGACGAAAAA ATCCGCATTA AAACACTGTC GCTTGGCGTG GTGATCCCGG ATATCACTTT CCATCTGGCA AAAGAGAATG CGCAGATGGC GCTGTTTTCG CCTTATGACG TAGAGCGAGT TTATGGCAAG CCGTTTGCCG ATGTGGCCAT CAGCCAACAC TATGACGAAC TGGTTGCCGA TGAACGCATT CGCAAAAAAT ACCTCAACGC CCGTGATTTC TTCCAGCGAC TGGCAGAAAT CCAGTTTGAG TCCGGCTATC CCTACATCAT GTATGAAGAC ACGGTAAACC GTGCTAACCC TGTCGCCGGG CGCATAAATA TGAGTAATCT CTGCTCAGAA ATTTTGCAGG TTAACAGCGC CTCAGAGTAT GACGAGAATC TCGACTATGC CCGCACAGGC CATGATATCT CCTGCAATTT AGGTTCGTTG AATATTGCGC ACACCATGGA TTCCCCCGAT TTTGCCCGCA CGGTAGAGAC TGCCGTGCGC GGTTTAACGG CAGTATCAGA TATGAGTCAT ATCCGCAGCG TGCCGTCCAT CGAAGCCGGA AATGCCGCCT CGCACGCCAT CGGACTGGGG CAGATGAATT TACACGGCTA TCTGGCGCGA GAAGGCATCG CTTATGGTTC GCCGGAAGCA CTGGATTTCA CCAATCTCTA TTTCTATGCC ATCACCTGGC ACGCACTGCG TACCTCGATG TTGCTGGCAC GCGAACGCGG TGAAACCTTC GCCGGGTTCA AACAGTCACG CTATGCCAGT GGTGAATATT TTAGCCAATA TCTGCAAGGG AACTGGCAGC CGAAAACGGG GAAAGTTGGC GAACTGTTTG CCCGTAGCGG TATTACGTTA CCTACCCGTG AGATGTGGGC GCAACTGCGC GACGACGTGA TGCGCTACGG CATTTACAAC CAGAATCTTC AGGCGGTGCC GCCAACAGGT TCTATCTCTT ATATCAACCA TGCTACGTCG AGTATTCATC CGATTGTGGC GAAAGTAGAG ATACGCAAAG AGGGCAAAAC AGGACGCGTT TACTACCCTG CCCCGTTTAT GACTAACGAG AATCTGGCGC TGTATCAGGA CGCTTACGAA ATTGGCGCAG AAAAGATCAT CGACACCTAC GCGGAAGCGA CTCGCCATGT CGATCAGGGG CTGTCGCTGA CGCTGTTTTT CCCCGATACC GCCACCACTC GCGATATCAA CAAAGCGCAG ATTTACGCCT GGCGCAAAGG TATCAAAACG CTCTATTACA TCCGGCTGCG TCAGATGGCG CTGGAAGGCA CTGAAATTGA AGGCTGCGTC TCCTGTGCAC TTTAA
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Protein sequence | MATTTAECLT QKTMDYHALN AMLNLYDSAG RIQFDKDRQA VDAFMATHVR PNSVTFSSQQ QRLNWLVNEG YYDESVLNRY SRDFVITLFA HAHTSGFRFQ TFLGAWKFYT SYTLKTFDGK RYLEDFADRV TMVALTLAQG DETLALQLTD EMLSGRFQPA TPTFLNCGKQ QRGELVSCFL LRIEDNMESI GRAVNSALQL SKRGGGVAFL LSNLREAGAP IKRIENQSSG VIPVMKMLED AFSYANQLGA RQGAGAVYLH AHHPDILRFL DTKRENADEK IRIKTLSLGV VIPDITFHLA KENAQMALFS PYDVERVYGK PFADVAISQH YDELVADERI RKKYLNARDF FQRLAEIQFE SGYPYIMYED TVNRANPVAG RINMSNLCSE ILQVNSASEY DENLDYARTG HDISCNLGSL NIAHTMDSPD FARTVETAVR GLTAVSDMSH IRSVPSIEAG NAASHAIGLG QMNLHGYLAR EGIAYGSPEA LDFTNLYFYA ITWHALRTSM LLARERGETF AGFKQSRYAS GEYFSQYLQG NWQPKTGKVG ELFARSGITL PTREMWAQLR DDVMRYGIYN QNLQAVPPTG SISYINHATS SIHPIVAKVE IRKEGKTGRV YYPAPFMTNE NLALYQDAYE IGAEKIIDTY AEATRHVDQG LSLTLFFPDT ATTRDINKAQ IYAWRKGIKT LYYIRLRQMA LEGTEIEGCV SCAL
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