Gene ECH74115_3906 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagECH74115_3906 
SymbolcsiR 
ID6972160 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameEscherichia coli O157:H7 str. EC4115 
KingdomBacteria 
Replicon accessionNC_011353 
Strand+ 
Start bp3622097 
End bp3622759 
Gene Length663 bp 
Protein Length220 aa 
Translation table11 
GC content53% 
IMG OID643387680 
ProductDNA-binding transcriptional regulator CsiR 
Protein accessionYP_002272128 
Protein GI209399433 
COG category[K] Transcription 
COG ID[COG1802] Transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones50 
Fosmid unclonability p-value0.429563 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCATTA CGTCTCTGGA TGGCTATCGC TGGCTGAAGA ACGATATTAT TCGCGGTAAT 
TTTCAACCGG ATGAAAAATT ACGAATGAGT TTGCTGACAT CGCGTTATGC ACTTGGCGTT 
GGGCCGTTAC GGGAAGCTCT TTCGCAACTG GTGGCGGAAC GGCTGGTCAC GGTGGTGAAT 
CAAAAAGGGT ATCGGGTGGC GTCTATGTCA GAGCAGGAGC TGCTCGATAT TTTCGACGCC 
CGCGCCAATA TGGAAGCGAT GTTAGTGAGT CTGGCGATTG CCCGCGGTGG CGATGAGTGG 
GAGGCAGACG TTCTCGCAAA AGCGCATCTG CTGAGTAAGC TTGAGGCCTG TGACGCCAGC 
GAGAAAATGC TTGATGAGTG GGATCTGCGT CATCAGGCGT TTCATACTGC AATTGTGGCG 
GGCTGTGGTT CTCACTATTT GCTGCAAATG CGTGAACGGT TGTTTGATCT GGCGGCGCGT 
TATCGATTTA TCTGGCTGCG GCGAACGGTG CTTTCGGTGG AAATGCTGGA GGATAAACAC 
GATCAGCACC AGACCCTGAC TGCGGCGGTA CTGGCGCGAG ATACCGCGCG CGCCAGTGAG 
TTAATGCGCC AGCATTTACT GACGCCAATT CCCATTATCC AGCAGGCGAT GGCTGGCAAT 
TAA
 
Protein sequence
MTITSLDGYR WLKNDIIRGN FQPDEKLRMS LLTSRYALGV GPLREALSQL VAERLVTVVN 
QKGYRVASMS EQELLDIFDA RANMEAMLVS LAIARGGDEW EADVLAKAHL LSKLEACDAS 
EKMLDEWDLR HQAFHTAIVA GCGSHYLLQM RERLFDLAAR YRFIWLRRTV LSVEMLEDKH 
DQHQTLTAAV LARDTARASE LMRQHLLTPI PIIQQAMAGN