| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | ECH74115_3905 |
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| Symbol | gabP |
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| ID | 6969779 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli O157:H7 str. EC4115 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011353 |
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| Strand | + |
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| Start bp | 3620676 |
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| End bp | 3622076 |
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| Gene Length | 1401 bp |
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| Protein Length | 466 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 643387679 |
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| Product | gamma-aminobutyrate transporter |
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| Protein accession | YP_002272127 |
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| Protein GI | 209400923 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG1113] Gamma-aminobutyrate permease and related permeases |
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| TIGRFAM ID | [TIGR01773] gamma-aminobutyrate permease |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 51 |
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| Fosmid unclonability p-value | 0.667666 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGGGCAAT CATCGCAACC ACATGAGTTA GGCGGCGGGC TGAAGTCACG CCATGTCACC
ATGTTGTCTA TTGCCGGTGT TATCGGCGCA AGTCTGTTTG TCGGTTCCAG CGTCGCCATC
GCCGAAGCGG GCCCGGCGGT ATTACTGGCC TATCTGTTCG CCGGGCTACT GGTGGTTATG
ATTATGCGGA TGTTGGCGGA AATGGCGGTT GCCACGCCCG ATACCGGTTC GTTTTCCACC
TATGCCGATA AAGCTATTGG TCGTTGGGCG GGTTATACCA TCGGCTGGTT GTACTGGTGG
TTTTGGGTAC TGGTTATCCC GCTGGAAGCC AACATCGCCG CCATGATCCT GCACTCATGG
GTTCCAGGCA TTCCCATCTG GTTATTTTCC CTCGTCATTA CCCTTGCCTT AACTGGCAGT
AATTTATTAA GCGTTAAAAA CTACGGCGAA TTTGAGTTCT GGCTGGCGCT GTGCAAAGTC
ATCGCTATCC TGGCCTTTAT TTTCCTTGGT GCAGTCGCAA TTAGCGGTTT TTACCCGTAT
GCCGACGTGA GCGGGATCTC AAGATTGTGG GATAGCGGCG GCTTTATGCC CAACGGCTTC
GGTGCGGTAT TAAGCGCGAT GTTGATCACC ATGTTCTCGT TTATGGGCGC AGAAATTGTC
ACCATTGCCG CCGCGGAATC CGACACGCCG GAAAAACATA TTGTCCGCGC TACCAACTCG
GTTATCTGGC GTATTTCTAT CTTCTATTTG TGCTCTATTT TTGTCGTAGT GGCGTTAATA
CCGTGGAATA TGCCGGGGCT GAAAGCCGTT GGATCTTATC GCTCGGTTCT GGAATTGCTC
AATATACCCC ATGCGAAATT AATCATGGAC TGCGTGATAT TACTTTCCGT AACCAGTTGC
CTGAACTCGG CGCTGTATAC CGCGTCAAGG ATGCTCTACT CCTTAAGCCG TCGCGGTGAT
GCGCCCGCGG TAATGGGCAA AATCAACCGC AGTAAAACCC CGTATGTGGC GGTGTTACTC
TCCACCGGAG CGGCATTTTT AACGGTCGTG GTGAACTATT ACGCACCTGC GAAAGTGTTT
AAATTCCTGA TCGACAGCTC CGGTGCTATC GCCCTGCTGG TTTATTTAGT CATCGCCGTT
TCACAGTTGC GGATGCGTAA AATTCTGCGA GCAGAAGGAA GCGAAATTCG CTTGCGCATG
TGGCTTTACC CGTGGCTCAC CTGGCTGGTA ATCGGCTTTA TTACCTTTGT GTTGGTGGTG
ATGTTATTCC GCCCGGCGCA ACAGTTAGAA GTGATCTCTA CCGGCTTATT AGCGATAGGG
ATTATCTGTA CCGTGCCGAT TATGGCGCGC TGGAAAAAGC TGGTATTGTG GCAAAAAACA
CCCGTTCATA ATACGCGCTG A
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| Protein sequence | MGQSSQPHEL GGGLKSRHVT MLSIAGVIGA SLFVGSSVAI AEAGPAVLLA YLFAGLLVVM
IMRMLAEMAV ATPDTGSFST YADKAIGRWA GYTIGWLYWW FWVLVIPLEA NIAAMILHSW
VPGIPIWLFS LVITLALTGS NLLSVKNYGE FEFWLALCKV IAILAFIFLG AVAISGFYPY
ADVSGISRLW DSGGFMPNGF GAVLSAMLIT MFSFMGAEIV TIAAAESDTP EKHIVRATNS
VIWRISIFYL CSIFVVVALI PWNMPGLKAV GSYRSVLELL NIPHAKLIMD CVILLSVTSC
LNSALYTASR MLYSLSRRGD APAVMGKINR SKTPYVAVLL STGAAFLTVV VNYYAPAKVF
KFLIDSSGAI ALLVYLVIAV SQLRMRKILR AEGSEIRLRM WLYPWLTWLV IGFITFVLVV
MLFRPAQQLE VISTGLLAIG IICTVPIMAR WKKLVLWQKT PVHNTR
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