| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | ECH74115_3813 |
|---|
| Symbol | srmB |
|---|
| ID | 6971237 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli O157:H7 str. EC4115 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011353 |
|---|
| Strand | + |
|---|
| Start bp | 3537386 |
|---|
| End bp | 3538720 |
|---|
| Gene Length | 1335 bp |
|---|
| Protein Length | 444 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 643387598 |
|---|
| Product | ATP-dependent RNA helicase SrmB |
|---|
| Protein accession | YP_002272051 |
|---|
| Protein GI | 209397789 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis
[K] Transcription
[L] Replication, recombination and repair |
|---|
| COG ID | [COG0513] Superfamily II DNA and RNA helicases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.152384 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 64 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACTGTAA CGACTTTTTC CGAACTTGAA CTCGACGAAA GCCTGCTGGA AGCCCTCCAG
GATAAAGGTT TCACTCGCCC GACCGCCATT CAGGCTGCCG CCATTCCGCC TGCGCTCGAT
GGCCGTGATG TACTCGGTTC TGCGCCGACA GGCACCGGTA AAACGGCGGC GTATCTGCTG
CCAGCGTTGC AGCACCTGCT CGATTTCCCG CGTAAGAAAT CCGGTCCGCC GCGTATTTTG
ATCCTCACCC CAACTCGCGA GCTGGCGATG CAGGTGGCCG ATCATGCCCG CGAACTGGCG
AAACATACGC ATCTGGATAT CGCCACCATC ACCGGCGGCG TAGCCTATAT GAACCACGCG
GAAGTGTTCA GCGAAAATCA GGACATCGTG GTCGCCACGA CCGGACGTCT GCTGCAATAC
ATAAAAGAAG AGAACTTCGA TTGCCGCGCG GTTGAAACGC TGATCCTCGA CGAAGCAGAC
CGTATGCTGG ATATGGGCTT CGCTCAGGAT ATCGAACATA TTGCTGGCGA AACGCGCTGG
CGTAAACAGA CCCTGCTCTT TTCGGCAACG CTGGAAGGCG ATGCGATTCA GGACTTTGCC
GAGCGTCTGC TGGAAGATCC GGTGGAGGTT TCTGCCAATC CGTCCACCCG TGAGCGCAAA
AAAATTCATC AGTGGTATTA CCGCGCCGAT GACCTGGAAC ATAAAACCGC ATTGCTGGTG
CATCTGTTAA AACAGCCGGA AGCGACCCGC TCAATTGTGT TTGTGCGTAA GCGTGAGCGT
GTGCATGAGC TGGCAAACTG GCTGCGCGAA GCGGGCATCA ACAACTGCTA TCTCGAAGGT
GAGATGGTAC AGGGCAAGCG TAACGAAGCG ATCAAACGTT TGACCGAAGG TCGCGTAAAC
GTACTGGTTG CAACCGATGT TGCCGCGCGC GGTATCGACA TTCCTGACGT CAGCCACGTC
TTTAACTTCG ATATGCCGCG CAGTGGCGAT ACTTATTTGC ACCGTATCGG ACGTACCGCG
CGCGCCGGTC GTAAAGGCAC CGCAATTTCG CTGGTAGAAG CCCATGACCA TCTGCTGCTG
GGCAAAGTTG GTCGCTATAT TGAAGAGCCA ATTAAAGCTC GCGTAATTGA TGAGTTACGC
CCGAAAACGC GTGCACCAAG CGAGAAGCAG ACCGGCAAGC CATCGAAGAA AGTACTGGCA
AAACGCGCCG AGAAGAAAAA AGCAAAAGAG AAAGAGAAGC CGCGGGTGAA AAAACGCCAT
CGCGATACCA AAAATATTGG TAAGCGCCGT AAACCAAGCG GAACGGGCGT GCCACCGCAA
ACGACAGAAG AGTAA
|
|---|
| Protein sequence | MTVTTFSELE LDESLLEALQ DKGFTRPTAI QAAAIPPALD GRDVLGSAPT GTGKTAAYLL
PALQHLLDFP RKKSGPPRIL ILTPTRELAM QVADHARELA KHTHLDIATI TGGVAYMNHA
EVFSENQDIV VATTGRLLQY IKEENFDCRA VETLILDEAD RMLDMGFAQD IEHIAGETRW
RKQTLLFSAT LEGDAIQDFA ERLLEDPVEV SANPSTRERK KIHQWYYRAD DLEHKTALLV
HLLKQPEATR SIVFVRKRER VHELANWLRE AGINNCYLEG EMVQGKRNEA IKRLTEGRVN
VLVATDVAAR GIDIPDVSHV FNFDMPRSGD TYLHRIGRTA RAGRKGTAIS LVEAHDHLLL
GKVGRYIEEP IKARVIDELR PKTRAPSEKQ TGKPSKKVLA KRAEKKKAKE KEKPRVKKRH
RDTKNIGKRR KPSGTGVPPQ TTEE
|
|---|
| |