| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | ECH74115_3810 |
|---|
| Symbol | rpoE |
|---|
| ID | 6966769 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli O157:H7 str. EC4115 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011353 |
|---|
| Strand | - |
|---|
| Start bp | 3533927 |
|---|
| End bp | 3534502 |
|---|
| Gene Length | 576 bp |
|---|
| Protein Length | 191 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 643387595 |
|---|
| Product | RNA polymerase sigma factor RpoE |
|---|
| Protein accession | YP_002272048 |
|---|
| Protein GI | 209400807 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
|---|
| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02939] RNA polymerase sigma factor RpoE |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.0374939 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 64 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGAGC AGTTAACGGA CCAGGTCCTG GTTGAACGGG TCCAGAAGGG AGATCAGAAA
GCCTTTAACT TACTGGTAGT GCGCTATCAG CATAAAGTGG CGAGTCTGGT TTCCCGCTAT
GTGCCGTCGG GTGATGTTCC CGATGTGGTA CAAGAAGCTT TTATTAAAGC CTATCGTGCG
CTGGATTCGT TCCGGGGAGA TAGCGCTTTT TATACATGGC TGTATCGGAT TGCTGTAAAT
ACAGCGAAAA ATTACCTGGT TGCTCAGGGG CGTCGTCCAC CTTCCAGTGA TGTGGATGCC
ATTGAAGCTG AAAACTTCGA AAGTGGCGGC GCGTTGAAAG AAATTTCGAA CCCTGAGAAC
TTAATGTTGT CAGAAGAACT GAGACAGATA GTTTTCCGAA CTATTGAGTC CCTCCCGGAA
GATTTACGCA TGGCAATAAC CTTGCGGGAG CTGGATGGCC TGAGCTATGA AGAGATAGCC
GCTATCATGG ATTGTCCGGT AGGTACGGTG CGTTCACGTA TCTTCCGAGC GAGGGAAGCT
ATTGATAACA AAGTTCAACC GCTTATCAGG CGTTGA
|
|---|
| Protein sequence | MSEQLTDQVL VERVQKGDQK AFNLLVVRYQ HKVASLVSRY VPSGDVPDVV QEAFIKAYRA
LDSFRGDSAF YTWLYRIAVN TAKNYLVAQG RRPPSSDVDA IEAENFESGG ALKEISNPEN
LMLSEELRQI VFRTIESLPE DLRMAITLRE LDGLSYEEIA AIMDCPVGTV RSRIFRAREA
IDNKVQPLIR R
|
|---|
| |