| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | ECH74115_3809 |
|---|
| Symbol | rseA |
|---|
| ID | 6967590 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli O157:H7 str. EC4115 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011353 |
|---|
| Strand | - |
|---|
| Start bp | 3533256 |
|---|
| End bp | 3533894 |
|---|
| Gene Length | 639 bp |
|---|
| Protein Length | 212 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 643387594 |
|---|
| Product | anti-RNA polymerase sigma factor SigE |
|---|
| Protein accession | YP_002272047 |
|---|
| Protein GI | 209395903 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG3073] Negative regulator of sigma E activity |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.0371131 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 62 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAGAAAG AACAACTTTC CGCTTTAATG GATGGCGAAA CGCTGGATAG TGAGCTGCTT
AACGAACTGG CTCATAACCC AGAAATGCAG AAAACCTGGG AAAGCTATCA CTTAATCCGT
GACTCAATGC GGGGTGATAC TCCCGAGGTG CTCCATTTCG ATATCTCTTC ACGCGTGATG
GCCGCCATTG AAGAAGAGCC AGTACGTCAA CCGGCGACAT TGATCCCGGA AGCCCAGCCT
GCGCCGCATG AATGGCAGAA AATGCCATTC TGGCAGAAAG TACGTCCGTG GGCGGCACAG
CTTACCCAAA TGGGCGTAGC CGCATGCGTA TCGCTTGCAG TTATCGTTGG CGTCCAGCAC
TATAATGGAC AATCTGAAAC GTCCCAGCAG CCCGAAACGC CGGTATTTAA TACACTGCCG
ATGATGGGTA AAGCCAGCCC GGTTAGCCTG GGAGTACCTT CTGAAGCGAC CGCAAATAAT
GGTCAACAGC AGCAGCGTCG TCGCATTAAT GCAATGTTGC AGGATTACGA ACTGCAACGC
CGACTCCACT CTGAACAGCT TCAGTTTGAG CAGGCGCAAA CCCAGCAAGC CGCTGTACAG
GTGCCAGGAA TTCAAACTTT AGGAACGCAA TCGCAGTAA
|
|---|
| Protein sequence | MQKEQLSALM DGETLDSELL NELAHNPEMQ KTWESYHLIR DSMRGDTPEV LHFDISSRVM
AAIEEEPVRQ PATLIPEAQP APHEWQKMPF WQKVRPWAAQ LTQMGVAACV SLAVIVGVQH
YNGQSETSQQ PETPVFNTLP MMGKASPVSL GVPSEATANN GQQQQRRRIN AMLQDYELQR
RLHSEQLQFE QAQTQQAAVQ VPGIQTLGTQ SQ
|
|---|
| |