Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | ECH74115_3693 |
Symbol | dapE |
ID | 6967106 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Escherichia coli O157:H7 str. EC4115 |
Kingdom | Bacteria |
Replicon accession | NC_011353 |
Strand | + |
Start bp | 3411848 |
End bp | 3412975 |
Gene Length | 1128 bp |
Protein Length | 375 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 643387487 |
Product | succinyl-diaminopimelate desuccinylase |
Protein accession | YP_002271940 |
Protein GI | 209396481 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0624] Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases |
TIGRFAM ID | [TIGR01246] succinyl-diaminopimelate desuccinylase, proteobacterial clade |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 94 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCGTGCC CGGTTATTGA GCTGACACAA CAGCTTATTC GCCGCCCTTC CCTGAGTCCT GATGACGCAG GATGCCAGGC TTTGTTGATT GAACGTTTGC AGGCGATCGG TTTTACCGTT GAACGCATGG ACTTTGCCGA TACGCAGAAT TTTTGGGCAT GGCGTGGGCA AGGTGAAACA TTGGCCTTTG CCGGGCATAC CGACGTGGTG CCGCCTGGCG ACGCCGATCG TTGGATCAAT CCGCCGTTTG AACCAACCAT TCGTGACGGC ATGTTATTCG GGCGCGGTGC GGCAGATATG AAAGGCTCGC TGGCGGCGAT GGTGGTAGCT GCAGAACGTT TTGTCGCACA ACATCCCAAC CATACAGGGC GACTGGCATT TCTGATCACC TCTGATGAAG AAGCCAGTGC CCACAATGGT ACGGTAAAAG CCGTCGAAGC GTTAATGGCA CGTAATGAGC GTCTCGATTA CTGCCTGGTC GGCGAACCGT CGAGTATCGA AGTGGTAGGT GATGTGGTGA AAAATGGTCG TCGTGGATCG TTAACCTGCA ACCTAACCAT TCATGGCGTT CAGGGGCATG TTGCCTACCC ACATCTGGCT GACAATCCGG TACATCGCGC AGCACCTTTC CTTAATGAAT TAGTGGCTAT TGAGTGGGAT CAGGGCAATG AATTCTTCCC GGCGACCAGT ATGCAGATTG CCAATATTCA GGCGGGAACG GGCAGTAACA ACGTTATTCC GGGTGAACTG TTTGTGCAGT TTAACTTCCG CTTCAGCACC GAACTGACTG ATGAGATGAT CAAAGCGCAG GTGCTTGCCC TGCTTGAAAA ACATCAACTG CGCTATACGG TGGATTGGTG GCTTTCCGGG CAGCCATTTT TGACCGCGCG CGGTAAACTG GTGGATGCGG TCGTTAACGC GGTTGAGCAC TATAATGAAA TTAAACCGCA GCTACTGACC ACAGGCGGAA CGTCCGACGG GCGCTTTATT GCCCGCATGG GGGCGCAGGT GGTGGAACTC GGGCCGGTCA ATGCCACTAT TCATAAAATT AATGAATGTG TGAACGCTGC CGACCTGCAG CTACTTGCCC GTATGTATCA ACGTATCATG GAACAGCTCG TCGCGTGA
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Protein sequence | MSCPVIELTQ QLIRRPSLSP DDAGCQALLI ERLQAIGFTV ERMDFADTQN FWAWRGQGET LAFAGHTDVV PPGDADRWIN PPFEPTIRDG MLFGRGAADM KGSLAAMVVA AERFVAQHPN HTGRLAFLIT SDEEASAHNG TVKAVEALMA RNERLDYCLV GEPSSIEVVG DVVKNGRRGS LTCNLTIHGV QGHVAYPHLA DNPVHRAAPF LNELVAIEWD QGNEFFPATS MQIANIQAGT GSNNVIPGEL FVQFNFRFST ELTDEMIKAQ VLALLEKHQL RYTVDWWLSG QPFLTARGKL VDAVVNAVEH YNEIKPQLLT TGGTSDGRFI ARMGAQVVEL GPVNATIHKI NECVNAADLQ LLARMYQRIM EQLVA
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