Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | ECH74115_3642 |
Symbol | ligA |
ID | 6969635 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Escherichia coli O157:H7 str. EC4115 |
Kingdom | Bacteria |
Replicon accession | NC_011353 |
Strand | - |
Start bp | 3356657 |
End bp | 3358672 |
Gene Length | 2016 bp |
Protein Length | 671 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 643387437 |
Product | NAD-dependent DNA ligase LigA |
Protein accession | YP_002271890 |
Protein GI | 209399429 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) |
TIGRFAM ID | [TIGR00575] DNA ligase, NAD-dependent |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.0000402344 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 60 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGAATCAA TCGAACAACA ACTGACAGAA CTGCGAACGA CGCTTCGCCA TCATGAATAT CTTTATCATG TGATGGATGC GCCGGAAATT CCCGACGCTG AATACGACAG GCTGATGCGC GAACTGCGCG AGCTGGAAAC CAAACATCCA GAACTGATTA CGCCTGATTC GCCTACCCAA CGTGTAGGTG CTGCGCCGCT GGCGGCTTTC AGCCAGATTC GCCATGAAGT GCCAATGCTG TCGCTGGATA ACGTTTTTGA TGAAGAAAGC TTTCTTGCCT TCAACAAACG TGTGCAGGAC CGTCTGAAAA GCAACGAGAA AGTCACCTGG TGCTGTGAGC TGAAGCTGGA TGGCCTTGCC GTCAGTATTC TGTATGAAAA TGGCGTTTTA GTCAGTGCCG CGACTCGTGG CGATGGCACC ACCGGGGAAG ATATCACGTC TAATGTGCGT ACTATTCGCG CCATTCCACT GAAGTTGCAC GGAGAGAATA TCCCGGCGCG TCTGGAAGTG CGTGGTGAAG TGTTCCTGCC GCAGGCGGGG TTCGAAAAGA TTAACGAAGA TGCGCGACGC ACGGGCGGGA AAGTGTTTGC TAACCCACGT AATGCGGCAG CTGGTTCACT GCGTCAGCTT GATCCGCGTA TTACAGCGAA GCGACCGCTC ACTTTTTTCT GCTATGGCGT TGGTGTTCTG GAAGGTGGCG AGCTGCCGGA TACTCATCTT GGCCGTTTAC TGCAATTTAA AAAGTGGGGG TTGCCGGTCA GCGATCGGGT AACGCTTTGT GAATCGGCGG AAGAAGTGCT GGCGTTCTAT CACAAAGTGG AAGAAGACCG CCCGACGCTG GGCTTTGATA TCGACGGCGT GGTGATTAAG GTCAACTCAC TGGAACAGCA GGAGCAGCTT GGCTTTGTCG CGCGAGCCCC GCGCTGGGCG GTAGCGTTTA AATTCCCGGC GCAGGAACAG ATGACCTTTG TGCGTGACGT CGAGTTTCAG GTTGGGCGTA CTGGCGCGAT TACGCCTGTT GCGCGTCTGG AACCTGTCCA TGTTGCAGGC GTGCTGGTGA GTAACGCAAC CTTACACAAT GCGGATGAAA TCGAACGTCT TGGTTTACGC ATTGGCGATA AAGTGGTGAT TCGCCGCGCT GGCGACGTGA TCCCGCAGGT GGTTAACGTC GTGCTTTCTG AACGCCCGGA AGATACCCGT GAGGTTGTAT TCCCGACGTA TTGTCCGGTA TGTGGTTCTG ACGTTGAGCG TGTGGAAGGT GAAGCGGTTG CCCGCTGTAC TGGTGGTCTG ATTTGCGGTG CGCAGCGTAA AGAGTCGCTG AAACACTTTG TTTCCCGCCG TGCGATGGAT GTTGACGGAA TGGGCGACAA AATCATCGAT CAGCTGGTTG AAAAAGAATA TGTCCACACT CCGGCGGATC TGTTCAAACT CACCGCAGGC AAACTGACCG GACTGGAGCG TATGGGGCCA AAATCGGCAC AAAACGTGGT TAACGCGCTG GAAAAAGCGA AAGAAACCAC CTTTGCTCGC TTCCTCTATG CACTTGGCAT CCGTGAAGTC GGCGAGGCCA CCGCAGCAGG TCTGGCGGCA TATTTCGGAA CGCTGGAAGC GCTGGAAGCC GCTTCGATTG AAGAGCTGCA AAAGGTGCCT GATGTTGGCA TTGTCGTTGC ATCCCACGTT CACAACTTCT TTGCCGAAGA AAGCAACCGC AATGTCATCA GCGAGCTGTT GGCGGAAGGT GTTCACTGGC CTGCGCCGAT CGTTATCAAC GCGGAAGAGA TTGACAGCCC GTTTGCTGGT AAAACCGTGG TGCTTACGGG CAGCTTAAGC CAGATGTCGC GTGATGACGC TAAAGCTCGA CTGGTCGAAC TGGGCGCGAA AGTCGCGGGC AGCGTGTCGA AGAAAACCGA TCTGGTGATA GCGGGTGAAG CTGCAGGATC TAAACTGGCG AAGGCGCAGG AACTGGGCAT TGAAGTCATC GACGAAGCGG AAATGCTGCG TTTGCTGGGT AGCTGA
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Protein sequence | MESIEQQLTE LRTTLRHHEY LYHVMDAPEI PDAEYDRLMR ELRELETKHP ELITPDSPTQ RVGAAPLAAF SQIRHEVPML SLDNVFDEES FLAFNKRVQD RLKSNEKVTW CCELKLDGLA VSILYENGVL VSAATRGDGT TGEDITSNVR TIRAIPLKLH GENIPARLEV RGEVFLPQAG FEKINEDARR TGGKVFANPR NAAAGSLRQL DPRITAKRPL TFFCYGVGVL EGGELPDTHL GRLLQFKKWG LPVSDRVTLC ESAEEVLAFY HKVEEDRPTL GFDIDGVVIK VNSLEQQEQL GFVARAPRWA VAFKFPAQEQ MTFVRDVEFQ VGRTGAITPV ARLEPVHVAG VLVSNATLHN ADEIERLGLR IGDKVVIRRA GDVIPQVVNV VLSERPEDTR EVVFPTYCPV CGSDVERVEG EAVARCTGGL ICGAQRKESL KHFVSRRAMD VDGMGDKIID QLVEKEYVHT PADLFKLTAG KLTGLERMGP KSAQNVVNAL EKAKETTFAR FLYALGIREV GEATAAGLAA YFGTLEALEA ASIEELQKVP DVGIVVASHV HNFFAEESNR NVISELLAEG VHWPAPIVIN AEEIDSPFAG KTVVLTGSLS QMSRDDAKAR LVELGAKVAG SVSKKTDLVI AGEAAGSKLA KAQELGIEVI DEAEMLRLLG S
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