Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | ECH74115_2988 |
Symbol | gmd |
ID | 6970756 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Escherichia coli O157:H7 str. EC4115 |
Kingdom | Bacteria |
Replicon accession | NC_011353 |
Strand | - |
Start bp | 2767400 |
End bp | 2768521 |
Gene Length | 1122 bp |
Protein Length | 373 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 643386828 |
Product | GDP-mannose 4,6-dehydratase |
Protein accession | YP_002271296 |
Protein GI | 209400542 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG1089] GDP-D-mannose dehydratase |
TIGRFAM ID | [TIGR01472] GDP-mannose 4,6-dehydratase |
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Plasmid Coverage information |
Num covering plasmid clones | 32 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 34 |
Fosmid unclonability p-value | 0.00343163 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGTCAAAAG TCGCTCTCAT CACCGGTGTA ACCGGACAAG ACGGTTCTTA CCTGGCAGAG TTTCTGCTGG AAAAAGGTTA CGAGGTGCAT GGTATTAAGC GTCGCGCATC GTCATTCAAC ACCGAGCGCG TGGATCACAT TTATCAGGAT CCGCACACCT GCAACCCGAA ATTCCATCTG CATTATGGCG ACCTGAGTGA TACCTCCAAC CTGACGCGTA TTTTGCGTGA AGTGCAGCCG GATGAAGTGT ACAACCTGGG CGCAATGAGC CACGTTGCGG TTTCTTTTGA GTCACCGGAA TATACCGCTG ACGTCGACGC GATGGGTACG CTGCGCCTGC TGGAGGCGAT CCGCTTCCTC GGTCTGGAAA AGAAAACCCG TTTCTATCAG GCTTCCACCT CTGAACTGTA TGGTCTGGTG CAGGAAATTC CGCAGAAAGA GACCACGCCG TTCTATCCGC GCTCTCCGTA TGCGGTCGCC AAACTGTATG CCTACTGGAT CACCGTCAAC TACCGTGAAT CCTACGGCAT GTATGCCTGT AACGGTATTC TCTTCAACCA TGAATCCCCG CGCCGCGGCG AAACCTTCGT TACCCGCAAA ATCACCCGCG CAATCGCCAA CATCGCCCAG GGGCTGGAGT CGTGCCTGTA CCTCGGCAAT ATGGATTCCC TGCGTGACTG GGGCCATGCC AAAGACTACG TAAAAATGCA GTGGATGATG CTGCAACAGG AACAGCCAGA AGATTTCGTT ATCGCGACCG GCGTTCAGTA CTCCGTACGT CAGTTCGTAG AAATGGCGGC AGCACAGCTG GGCATCAAAC TGCGCTTTGA AGGCACGGGC GTTGAAGAGA AGGGCATTGT GGTTTCCGTC ACCGGGCATG ACGCGCCGGG TGTTAAACCG GGTGATGTGA TTATCGCCGT TGATCCGCGT TACTTCCGTC CGGCTGAAGT TGAAACGCTG CTCGGCGACC CGACCAAAGC GCACGAAAAA CTGGGCTGGA AACCGGAAAT CACCCTCAGA GAGATGGTGT CTGAAATGGT GGCTAATGAC CTCGAAGCGG CGAAAAAACA CTCTCTGCTG AAATCTCACG GCTACGACGT GGCGATCGCG CTGGAGTCAT AA
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Protein sequence | MSKVALITGV TGQDGSYLAE FLLEKGYEVH GIKRRASSFN TERVDHIYQD PHTCNPKFHL HYGDLSDTSN LTRILREVQP DEVYNLGAMS HVAVSFESPE YTADVDAMGT LRLLEAIRFL GLEKKTRFYQ ASTSELYGLV QEIPQKETTP FYPRSPYAVA KLYAYWITVN YRESYGMYAC NGILFNHESP RRGETFVTRK ITRAIANIAQ GLESCLYLGN MDSLRDWGHA KDYVKMQWMM LQQEQPEDFV IATGVQYSVR QFVEMAAAQL GIKLRFEGTG VEEKGIVVSV TGHDAPGVKP GDVIIAVDPR YFRPAEVETL LGDPTKAHEK LGWKPEITLR EMVSEMVAND LEAAKKHSLL KSHGYDVAIA LES
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