| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | ECH74115_2696 |
|---|
| Symbol | fliA |
|---|
| ID | 6971865 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli O157:H7 str. EC4115 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011353 |
|---|
| Strand | - |
|---|
| Start bp | 2530951 |
|---|
| End bp | 2531670 |
|---|
| Gene Length | 720 bp |
|---|
| Protein Length | 239 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 643386557 |
|---|
| Product | flagellar biosynthesis sigma factor |
|---|
| Protein accession | YP_002271036 |
|---|
| Protein GI | 209399914 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1191] DNA-directed RNA polymerase specialized sigma subunit |
|---|
| TIGRFAM ID | [TIGR02479] RNA polymerase sigma factor, FliA/WhiG family
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 43 |
|---|
| Fosmid unclonability p-value | 0.099334 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAATTCAC TCTATACCGC TGAAGGTGTA ATGGATAAAC ACTCGCTGTG GCAGCGTTAT
GTCCCGCTGG TGCGTCACGA AGCATTGCGC CTGCAGGTTC GACTGCCCGC GAGCGTGGAA
CTTGACGATC TGCTACAGGC GGGCGGCATT GGGTTACTTA ATGCCGTCGA ACGCTATGAC
GCCCTACAAG GAACGGCATT TACAACTTAC GCAGTGCAGC GTATCCGTGG CGCTATGCTG
GATGAACTTC GCAGCCGTGA CTGGGTGCCG CGCAGCGTGC GACGCAACGC GCGTGAAGTG
GCACAGGCAA TAGGGCAACT GGAGCAGGAA CTTGGCCGCA ACGCCACGGA AACTGAGGTA
GCGGAACGTT TAGGGATCGA TATTGCCGAT TATCGCCAAA TGTTGCTCGA CACCAATAAC
AGCCAGCTCT TCTCCTACGA TGAGTGGCGC GAAGAGCACG GCGATAGCAT CGAATTGGTT
ACTGATGATC ATCAACGAGA AAACCCGCTA CAACAACTAC TGGACAGTAA TCTGCGCCAG
CGGGTGATGG AAGCTATCGA AACGTTGCCG GAGCGCGAAA AACTGGTATT AACCCTCTAT
TACCAGGAAG AGCTGAATCT CAAAGAGATT GGTGCAGTGC TGGAGGTCGG GGAATCGCGG
GTCAGTCAGT TACACAGCCA GGCTATTAAA CGGTTACGCA CTAAACTGGG TAAGTTATAA
|
|---|
| Protein sequence | MNSLYTAEGV MDKHSLWQRY VPLVRHEALR LQVRLPASVE LDDLLQAGGI GLLNAVERYD
ALQGTAFTTY AVQRIRGAML DELRSRDWVP RSVRRNAREV AQAIGQLEQE LGRNATETEV
AERLGIDIAD YRQMLLDTNN SQLFSYDEWR EEHGDSIELV TDDHQRENPL QQLLDSNLRQ
RVMEAIETLP EREKLVLTLY YQEELNLKEI GAVLEVGESR VSQLHSQAIK RLRTKLGKL
|
|---|
| |