| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | ECH74115_2483 |
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| Symbol | topB |
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| ID | 6970094 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli O157:H7 str. EC4115 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011353 |
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| Strand | - |
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| Start bp | 2350805 |
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| End bp | 2352766 |
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| Gene Length | 1962 bp |
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| Protein Length | 653 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 643386352 |
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| Product | DNA topoisomerase III |
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| Protein accession | YP_002270834 |
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| Protein GI | 209398550 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0550] Topoisomerase IA |
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| TIGRFAM ID | [TIGR01056] DNA topoisomerase III, bacteria and conjugative plasmid |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.00000298229 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 50 |
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| Fosmid unclonability p-value | 0.566589 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGGTTGT TTATTGCCGA AAAACCGAGT CTGGCGCGCG CCATTGCTGA TGTCCTGCCC
AAACCGCACC GGAAAGGCGA TGGCTTTATC GAGTGCGGTA ATGGTCAGGT GGTGACCTGG
TGTATCGGTC ACCTGCTTGA GCAGGCGCAG CCAGACGCCT ACGACAGCCG CTATGCGCGC
TGGAATCTTG CGGATTTGCC GATTGTCCCG GAAAAGTGGC AATTACAGCC CCGACCCTCC
GTGACCAAAC AACTTAACGT CATCAAACGG TACCTGCATG AAGCCAGCGA AATCGTTCAC
GCCGGGGACC CGGATCGCGA AGGGCAACTG CTGGTGGATG AAGTGCTGGA CTATCTACAA
CTGGCACCGG AAAAGCGCCA GCAGGTGCAG CGTTGCTTGA TAAACGACCT GAACCCGCAG
GCGGTTGAGC GGGCGATCGA CCGTCTTCGT TCCAACAGTG AGTTTGTACC GCTGTGCGTT
TCTGCGCTGG CGCGAGCGCG TGCCGACTGG CTGTACGGCA TCAATATGAC CCGTGCGTAT
ACCATTCTCG GTCGCAATGC CGGTTATCAG GGCGTGCTTT CCGTGGGACG CGTGCAGACG
CCCGTGCTTG GGCTGGTGGT GCGCCGCGAT GAAGAGATTG AAAACTTCGT GGCGAAAGAC
TTCTTTGAAG TCAAAGCACA TATCGTGACA CCTGCCGATG AGCGGTTTAC CGCTATCTGG
CAACCGAGCG AAGCGTGTGA ACCGTACCAG GATGAAGAAG GGCGCTTGTT ACATCGTCCA
CTGGCGGAGC ATGTGGTTAA CCGCATTAGT GGTCAACCGG CTATTGTCAC CAGCTATAAC
GATAAACGGG AATCAGAATC CGCGCCGCTG CCGTTTTCGC TTTCGGCGTT GCAGATTGAA
GCGGCAAAAC GCTTTGGTCT GAGCGCGCAG AACGTGCTTG ATATCTGCCA GAAGCTGTAC
GAAACGCACA AGCTAATCAC TTATCCGCGT TCCGATTGTC GCTATTTGCC AGAAGAACAT
TTTGCCGGAC GCCACGCGGT GATGAATGCC ATCAGCGTTC ATGCACCAGA TCTGTTGCCG
CAGCCAGTGG TAGATCCAGA TATACGCAAC CGCTGTTGGG ATGACAAAAA GGTCGATGCG
CACCACGCCA TCATTCCGAC CGCACGGAGT TCTGCGATCA ACCTGACGGA GAACGAAGCG
AAGGTCTATA ACCTGATTTC CCGTCAGTAT CTGATGCAGT TCTGCCCGGA TGCGGTGTTC
CGCAAGTGTG TTATCGAACT GGACATTGCC AAAGGCAAAT TTGTCGCTAA AGCGCGTTTT
CTTGCTGAAG CAGGCTGGCG CACGCTGTTA GGCAGCAAAG AGCGCGATGA AGAAAACGAC
GGTACGCCAT TGCCTGTGGT GGCGAAAGGC GATGAGTTGC TGTGTGAAAA AGGTGAAGTG
GTAGAGCGGC AAACCCAGCC GCCGCGCCAT TTTACCGATG CAACACTGCT TTCGGCGATG
ACCGGGATCG CGCGCTTTGT GCAGGACAAA GATCTGAAAA AGATCCTTCG TGCGACCGAT
GGTCTGGGGA CAGAAGCAAC GCGTGCCGGG ATTATTGAAC TGTTGTTCAA GCGTGGTTTC
CTCATCAAAA AAGGGCGCTA TATCCACTCC ACCGACGCCG GAAAAGCGTT ATTCCATTCG
CTGCCAGAAA TGGCTACGCG ACCGGACATG ACCGCGCACT GGGAATCGGT GCTGACGCAA
ATCAGCGAAA AGCAGTGTCG CTATCAGGAC TTTATGCAGC CGCTGGTGGG GACGCTATAT
CAGCTTATTG ATCAAGCCAA ACGTACTCCG GTGCGGCAGT TTCGCGGCAT TGTGGCTCCG
GGCAGTGGTG GCAGTGCTGA TAAGAAAAAG GCTGCACCGC GTAAACGTAG TGCGAAAAAA
AGTCCGCCAG CAGATGAAGC CGGAAGCGGG GCGATAGCGT AA
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| Protein sequence | MRLFIAEKPS LARAIADVLP KPHRKGDGFI ECGNGQVVTW CIGHLLEQAQ PDAYDSRYAR
WNLADLPIVP EKWQLQPRPS VTKQLNVIKR YLHEASEIVH AGDPDREGQL LVDEVLDYLQ
LAPEKRQQVQ RCLINDLNPQ AVERAIDRLR SNSEFVPLCV SALARARADW LYGINMTRAY
TILGRNAGYQ GVLSVGRVQT PVLGLVVRRD EEIENFVAKD FFEVKAHIVT PADERFTAIW
QPSEACEPYQ DEEGRLLHRP LAEHVVNRIS GQPAIVTSYN DKRESESAPL PFSLSALQIE
AAKRFGLSAQ NVLDICQKLY ETHKLITYPR SDCRYLPEEH FAGRHAVMNA ISVHAPDLLP
QPVVDPDIRN RCWDDKKVDA HHAIIPTARS SAINLTENEA KVYNLISRQY LMQFCPDAVF
RKCVIELDIA KGKFVAKARF LAEAGWRTLL GSKERDEEND GTPLPVVAKG DELLCEKGEV
VERQTQPPRH FTDATLLSAM TGIARFVQDK DLKKILRATD GLGTEATRAG IIELLFKRGF
LIKKGRYIHS TDAGKALFHS LPEMATRPDM TAHWESVLTQ ISEKQCRYQD FMQPLVGTLY
QLIDQAKRTP VRQFRGIVAP GSGGSADKKK AAPRKRSAKK SPPADEAGSG AIA
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