| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | ECH74115_2300 |
|---|
| Symbol | dmsD |
|---|
| ID | 6972141 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli O157:H7 str. EC4115 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011353 |
|---|
| Strand | + |
|---|
| Start bp | 2170603 |
|---|
| End bp | 2171217 |
|---|
| Gene Length | 615 bp |
|---|
| Protein Length | 204 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 643386178 |
|---|
| Product | twin-argninine leader-binding protein DmsD |
|---|
| Protein accession | YP_002270662 |
|---|
| Protein GI | 209400474 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG3381] Uncharacterized component of anaerobic dehydrogenases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 39 |
|---|
| Fosmid unclonability p-value | 0.0130846 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCCATT TTTCACAGCA AGATAATTTT TCTGTCGCGG CGCGCGTGTT GGGCGCGCTG
TTTTATTACG CTCCAGAGAG TGCTGAAGCC GCACCTCTGG TTGCGGTACT CACCAGTGAC
GGCTGGGAAA CTCAGTGGCC TCTACCAGAA GCGTCATTAG CGCCGCTGGT GACGGCTTTT
CAGACACAGT GTGAAGAGAC TCACGCCCAG GCCTGGCAGC GTTTGTTTGT CGGCCCGTGG
GCACTGCCGT CTCCGCCGTG GGGGTCGGTC TGGCTGGATC GCGAATCTGT GCTGTTTGGC
GATTCAACAT TGGCACTTCG TCAGTGGATG CGCGAGAAAG GCATTCAGTT TGAAATGAAG
CAAAACGAAC CGGAAGATCA TTTTGGTTCA CTGCTGTTGA TGGCTGCGTG GTTGGCGGAG
AATGGTCGCC AGACAGAATG CGAAGAATTG CTGGCATGGC ACCTTTTTCC CTGGTCAACA
CGTTTTCTTG ACGTTTTTAT CGAAAAAGCA GAACACCCTT TCTACCGTGC ACTGGGTGAA
CTGGCTCGCT TAACGCTGGC GCAATGGCAA TCACAACTGT TAATTCCTGT CGCGGTTAAA
CCACTCTTTC GATAG
|
|---|
| Protein sequence | MTHFSQQDNF SVAARVLGAL FYYAPESAEA APLVAVLTSD GWETQWPLPE ASLAPLVTAF
QTQCEETHAQ AWQRLFVGPW ALPSPPWGSV WLDRESVLFG DSTLALRQWM REKGIQFEMK
QNEPEDHFGS LLLMAAWLAE NGRQTECEEL LAWHLFPWST RFLDVFIEKA EHPFYRALGE
LARLTLAQWQ SQLLIPVAVK PLFR
|
|---|
| |