Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | ECH74115_2128 |
Symbol | lsrD |
ID | 6969980 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Escherichia coli O157:H7 str. EC4115 |
Kingdom | Bacteria |
Replicon accession | NC_011353 |
Strand | + |
Start bp | 2042570 |
End bp | 2043562 |
Gene Length | 993 bp |
Protein Length | 330 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 643386025 |
Product | autoinducer-2 ABC transporter, permease protein LsrD |
Protein accession | YP_002270514 |
Protein GI | 209399642 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG1172] Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 55 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGTATTC GCTACGGTTG GGAACTGGCT CTTGCCGCAC TGCTTGTTAT TGAGATTGTC TCATTTGGTG CAATTAACCC GCGGATGTTA GATCTCAATA TGTTGCTGTT CAGCACCAGT GACTTTATCT GCATTGGCAT TGTCGCCCTA CCGCTGACGA TGGTGATTGT CAGTGGCGGG ATCGATATTT CGTTTGGTTC GACCATCGGC CTCTGCGCCA TTGCATTGGG CGTACTGTTT CAAAGTGGTG TGCCGATGCC GCTGGCGATT CTCCTGACCT TACTGCTCGG CGCATTGTGC GGGCTGATCA ACGCCGGATT AATTATCTAT ACCAAAGTTA ACCCGCTGGT GATTACGCTT GGCACGCTGT ATCTGTTTGC CGGAAGCGCC CTGCTGCTTT CCGGGATGGC CGGGGCGACG GGGTACGAAG GTATTGGTGG ATTCCCGATG GCGTTTACAG ATTTCGCTAA CCTGGATGTG TTGGGGCTCC CCGTTCCGCT GATTATCTTC CTGATATGTC TCCTCGTTTT CTGGCTCTGG CTGCATAAAA CCCATGCCGG ACGTAACGTG TTTTTGATTG GGCAAAGCCC GCGCGTGGCG CTTTATAGCG CGATTCCAGT TAACCGTACC TTATGTGCGC TCTATGCCAT GACGGGGCTG GCGTCTGCGG TCGCCGCTGT GCTGCTGGTG TCGTATTTTG GTTCAGCACG TTCCGATCTC GGTGCGTCGT TTCTGATGCC CGCCATCACC GCCGTGGTGC TTGGCGGTGC CAATATTTAT GGTGGTTCCG GTGCCATTAT CGGCACCGCC ATTGCGGTTT TATTAGTGGG ATATTTGCAA CAAGGTTTGC AAATGGCAGG AGTGCCAAAT CAGGTGTCCA GCGCCCTTTC CGGTGCGCTA CTTATCGTCG TTGTCGTAGG TCGTTCCGTT AGCCTGCATC GCCAGCAAAT TAAAGAGTGG CTGGCGCGTC GGGCCAATAA CCCATTGCCA TAA
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Protein sequence | MRIRYGWELA LAALLVIEIV SFGAINPRML DLNMLLFSTS DFICIGIVAL PLTMVIVSGG IDISFGSTIG LCAIALGVLF QSGVPMPLAI LLTLLLGALC GLINAGLIIY TKVNPLVITL GTLYLFAGSA LLLSGMAGAT GYEGIGGFPM AFTDFANLDV LGLPVPLIIF LICLLVFWLW LHKTHAGRNV FLIGQSPRVA LYSAIPVNRT LCALYAMTGL ASAVAAVLLV SYFGSARSDL GASFLMPAIT AVVLGGANIY GGSGAIIGTA IAVLLVGYLQ QGLQMAGVPN QVSSALSGAL LIVVVVGRSV SLHRQQIKEW LARRANNPLP
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