| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | ECH74115_2045 |
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| Symbol | ydcS |
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| ID | 6970725 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli O157:H7 str. EC4115 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011353 |
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| Strand | + |
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| Start bp | 1942008 |
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| End bp | 1943153 |
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| Gene Length | 1146 bp |
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| Protein Length | 381 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 643385957 |
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| Product | ABC transporter, periplasmic substrate-binding protein |
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| Protein accession | YP_002270446 |
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| Protein GI | 209397208 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0687] Spermidine/putrescine-binding periplasmic protein |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.600032 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.000000000000249454 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAGCAAGA CATTTGCCCG CAGCAGCCTG TGTGCGCTCA GCATGACAAT AATGACCGCT
CACGCCGCCG AACCGCCTAC CAATTTAGAT AAACCGGAAG GGCGACTGGA TATTATCGCC
TGGCCGGGAT ATATCGAACG CGGACAAACT GATAAACAAT ACGACTGGGT AACGCAATTC
GAAAAAGAGA CAGGCTGCGC GGTGAATGTT AAAACCGCCG CGACTTCCGA TGAGATGGTC
AGTCTGATGA CCAAAGGGGG TTACGATCTG GTTACGGCAT CCGGCGATGC CTCGCTGCGT
TTGATTATGG GTAAACGCGT GCAGCCGATT AATACCGCCT TGATTCCCAA CTGGAAAACG
CTTGATCCGC GCGTGGTTAA AGGCGACTGG TTTAACGTTG GCGGCAAAGT TTACGGCACA
CCTTACCAAT GGGGGCCGAA CCTGCTGATG TACAACACTA AAACCTTCCC GACGCCGCCG
GATAGCTGGC AAGTGGTTTT TGTTGAGCAA AATCTGCAGG ACGGCAAGAG CAATAAAGGC
CGCGTTCAGG CTTATGATGG CCCTATCTAC ATTGCGGACG CTGCGTTGTT CGTTAAAGCC
ACTCAGCCGC AGTTGGGCAT CAGCGATCCG TATCAACTCA CCGAAGAACA GTACCAGGCG
GTGCTGAAAG TGCTGCGTGA TCAACATAGT TTGATCCATC GCTACTGGCA TGACACTACC
GTGCAAATGA GCGATTTCAA AAACGAGGGT GTGGTCGCTT CCAGTGCCTG GCCCTATCAG
ACCAACGCCC TGAAAGCCGA AGGTCAGCCT GTCGCTACCG TTTTCCCGAA GGAGGGCGTT
ACCGGTTGGG CTGACACCAC CATGCTACAT AGCGAAGCGA AACATCCGGT TTGCGCCTAC
AAATGGATGA ACTGGTCATT AACGCCAAAA GTGCAGGGCG ATGTGGCGGC CTGGTTTGGC
TCGTTACCAG TCGTGCCGGA AGGGTGTAAA GCCAGTTCGT TATTAGGCGA GAAAGGTTGT
GAAACAAACG GTTTTAACTA TTTCGATAAA ATAGCCTTCT GGAAAACGCC TATAGCAGAA
GGGGGCAAGT TTGTTCCCTA CAGTCGCTGG ACGCAGGATT ACATTGCCAT TATGGGCGGT
CGCTAA
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| Protein sequence | MSKTFARSSL CALSMTIMTA HAAEPPTNLD KPEGRLDIIA WPGYIERGQT DKQYDWVTQF
EKETGCAVNV KTAATSDEMV SLMTKGGYDL VTASGDASLR LIMGKRVQPI NTALIPNWKT
LDPRVVKGDW FNVGGKVYGT PYQWGPNLLM YNTKTFPTPP DSWQVVFVEQ NLQDGKSNKG
RVQAYDGPIY IADAALFVKA TQPQLGISDP YQLTEEQYQA VLKVLRDQHS LIHRYWHDTT
VQMSDFKNEG VVASSAWPYQ TNALKAEGQP VATVFPKEGV TGWADTTMLH SEAKHPVCAY
KWMNWSLTPK VQGDVAAWFG SLPVVPEGCK ASSLLGEKGC ETNGFNYFDK IAFWKTPIAE
GGKFVPYSRW TQDYIAIMGG R
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